PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000272542
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 874aa    MW: 96619.5 Da    PI: 8.2886
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000272542genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-096917281954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  MDP0000272542 691 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 728
                    564459******************************87 PP
2BELL101.46.8e-33540608472
           BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    + q+kkakLl ++eeV +rYkqy++q+q+v++sFe vagl sa+pY+s+Al+++++hFrcL + i++q+
  MDP0000272542 540 KYQQKKAKLLYMQEEVSRRYKQYHQQMQMVVASFESVAGLSSATPYISMALNTVAKHFRCLTNSIKDQL 608
                    689***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-39439606IPR006563POX domain
PfamPF075261.3E-39444604IPR006563POX domain
PROSITE profilePS5007111.92669732IPR001356Homeobox domain
CDDcd000864.84E-11672733No hitNo description
SMARTSM003894.1E-8672736IPR001356Homeobox domain
SuperFamilySSF466899.84E-17674739IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27675736IPR009057Homeodomain-like
PfamPF059204.2E-18689728IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MVKIVFAFKR YGIRVSWERR RCTVCDSXFC CRQSSKLNSK TTVCGKVSAS SKLIPDNYSR  60
DLXEFEWMEM SGFRQESHVA QQSRRDKLRV HQTSSPSHHL DNLPNNSGKL PLHPGLNPDI  120
VQVRNVRNAN LLYDPTMFSS EMLNFSINAN VPLSAHRDTM ACHDQDLGAA QPASESQNFG  180
NWRSTLNPPQ SLDWVNTYTS GYRDVVQSSL ANPSADQISI HHVAQEHLGG GTMHFSSPSL  240
NYVNTLQDVV TSASQGRQQD QLEMASTVHQ RFIENELVRV PSYGNQSNTL RFSNGSTRFS  300
NGSTSWMDRQ PIENCHRSSG GGLEFSIAKS VDEEMRTGMS SDSNQQGLSL SLSSNPPSNK  360
LPVAQLIGSQ DLHVSTDDHD DHALKDLQNS KMGKSSGGYL CSITKPSVIS KACGKSLQDI  420
VGTSNTSIYR NTGPLGPFTG YAAILKSSKF LKPAQQLLDE FCRVSDSKLL KTCEASERMS  480
RDVSTSASAS ISTEAVNAIE TEVVAKRNNS GASFSTFYGS NEINSDGGAA SISSESFRPK  540
YQQKKAKLLY MQEEVSRRYK QYHQQMQMVV ASFESVAGLS SATPYISMAL NTVAKHFRCL  600
TNSIKDQLKH VRKALGEENM SSAVTAAVTA GCSSKGEKNL AKLKYMGLGF QKHTSSGGGS  660
LVGFSEPQQH VWRPQRGLPE RSVAILRAWL FEHFLHPYPT DTDKHMLATQ TGLSRNQVSN  720
WFINARVRVW KPMVEEIHML ETRGGSHEAV QDPINKDENS ANEGTSSRPN NDHQLSMTMM  780
PDRQLECSGD AEQQNQEMKR SRLECQVPSS MDGGLMGFVP YQRGGFEAGG LGAVSLTLGL  840
RHGVESAQQQ QHLQQQEDQL RRQLGGQVVR DYVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15678735158Homeobox protein Meis1
4xrs_B1e-15678735158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385344.10.0BEL1-like homeodomain protein 9 isoform X2
TrEMBLA0A498IQ860.0A0A498IQ86_MALDO; Uncharacterized protein
STRINGXP_008385341.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-88BEL1-like homeodomain 8