PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000272003
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 328aa    MW: 36937.9 Da    PI: 8.7487
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000272003genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.9e-3269122255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    prlrWtp+LH rF++ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+YR+
  MDP0000272003  69 PRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQLMNIKGLNIAHVKSHLQMYRS 122
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.00265125IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-3065123IPR009057Homeodomain-like
SuperFamilySSF466891.51E-1467123IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-2269124IPR006447Myb domain, plants
PfamPF002498.9E-970121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MMGSQGGSEC SKTSPSDKQN EDGSESGENY SNGENSKPKN NGGSSSNSTV EESDQKKTSV  60
RPYVRSKMPR LRWTPDLHLR FIHAVERLGG QDRATPKLVL QLMNIKGLNI AHVKSHLQMY  120
RSKKIDDAGQ VLADHQGHLV ECGDKNIYNL SQLPMLQGYN RSHTTSFRYG SYGDTNSWTA  180
LENPRFSRSS TGFQGNWSTS STGNNAYNYL TSCSFGDHPQ SSWITRTLKE ECQLHNIRES  240
LKPKEFITSF NTNRGPFRDS DTISKNLVQD QSKMLKRKAS DCDDLDLDLS LRLTSKKNDE  300
DHTHEVDSNL SLCLYSPPTS SKLRRLKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1770124357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008363851.10.0two-component response regulator ARR18-like
TrEMBLA0A498K2100.0A0A498K210_MALDO; Uncharacterized protein
STRINGXP_008363851.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-59G2-like family protein