PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000271563

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 218aa MW: 25258 Da PI: 8.5369

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000271563	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.4	3.6e-11	105	130	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++ ++C +++rtG+C yG+rC+++H+ MDP0000271563 105 PGVPNCVYYMRTGFCGYGGRCQYNHP 130 5789*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.629	29	57	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4	29	56	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.075	104	132	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-6	104	131	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-8	106	130	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	108	132	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	110	130	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
SEEVRIAKEV EAHELRIRKE LEKQEIVRRK GVQPCTFYLQ NGQCKFGFTR KFDHRVQTMR 60 YNLSASSLVD MPVVQYPVGF LLATLAPSSS SLDLRPRSES YPEKPGVPNC VYYMRTGFCG 120 YGGRCQYNHP HDRGASYRGL PSESGGNLYV SYELLFYPRY HLDQSSLLCQ KPLLAKPMVM 180 DVYQEYILVT YRPFDVHIFH VKLFGEFTTP NLQIVEHL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12211	9e-95	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	8e-17	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000271563