PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000271388
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 446aa    MW: 49544.7 Da    PI: 4.9772
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000271388genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.6e-082063340
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    r C+ +  k++++fC  ++ +lC+ C  + H+       H++v
  MDP0000271388 20 SRACDSCLVKRARWFCAADDAFLCQRCDASVHSAnqlasrHERV 63
                   578*****************************667888888876 PP
2CCT67.92.7e-23377420144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  MDP0000271388 377 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 420
                    9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5661865IPR000315B-box-type zinc finger
SMARTSM003362.5E-101865IPR000315B-box-type zinc finger
PfamPF006436.2E-72063IPR000315B-box-type zinc finger
CDDcd000211.36E-92165No hitNo description
PfamPF062036.1E-18377419IPR010402CCT domain
PROSITE profilePS5101716.083377419IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAPHMITDKK AANAMGGNTS RACDSCLVKR ARWFCAADDA FLCQRCDASV HSANQLASRH  60
ERVRLQGSSF KANASVQLIA DQAAPAWHKG FKRKARTPRH NNKPGFVAKD EQEKVGLHPP  120
LPFVPEIGCQ EANLMEDEEN EDLEQLLYRV PIYDPFAAEL CNISSSDQVG NNTGAIDLDA  180
EEIEIRNTGN DLDNLGGFLR SDMELAEFAA DVENLLGGGL DEDCSDIKGV LGLLDEGKEV  240
KVEEEVEGIE FNPSILDWSL YYDQSSAVPV LMGSEEDREE EEKVVLLMGA QSSDEIGFME  300
NKQIVMKRKN ICLKLDYEAV ITAWASQGSQ WTTGTRPELN ADEGWLDCMG MWPTEIHQPH  360
GDSAGCVSRG KGDDPGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT  420
TSSFGGVGSS SSNAPAAAFP YLMINK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387403RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.226191e-157fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374747.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A498JLY00.0A0A498JLY0_MALDO; Uncharacterized protein
STRINGXP_008374747.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.13e-76B-box type zinc finger protein with CCT domain