PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000271272
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 935aa    MW: 104921 Da    PI: 5.2843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000271272genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-09151172627
                    -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                    C +++rtG+Ck+G++Ck++H++
  MDP0000271272 151 CWNYLRTGICKFGSNCKYNHPR 172
                    779*****************96 PP
2zf-CCCH40.64.2e-13230254226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C++++rtGtCkyG +CkF+H+
  MDP0000271272 230 GEKDCSYYMRTGTCKYGINCKFNHP 254
                    7889********************9 PP
3zf-CCCH36.11.1e-11651673527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     C+++++tG Ck+G++CkF+H++
  MDP0000271272 651 DCSYYLKTGNCKFGSNCKFNHPR 673
                    7********************96 PP
4zf-CCCH35.91.2e-11731755226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C++++rtGtCky  +CkF+H+
  MDP0000271272 731 GEKDCPYYMRTGTCKYETNCKFNHP 755
                    7889********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.544145173IPR000571Zinc finger, CCCH-type
SMARTSM003560.0054147172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5147171IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-7151172IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216228256IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10230254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6231255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5234253IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4306333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.047306334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-5309335IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6646673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6646673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263646674IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9650673IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5652671IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6729756IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112729757IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9731755IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5732756IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4735754IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-4842869IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.286842870IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MYRIAATXRA LSIKPVPGXF HDVPQNPPSV PSPEPSVVEI LDWIGTLGPA VLDEIQQFDP  60
AFLDEDRNFD PSIVDGIRKL SLKENEEKEE EEKERETEKE KENEKERERE KSESSSSSGS  120
GGGNENGGEV GEEVVEESSR RDQYPLRLGD CWNYLRTGIC KFGSNCKYNH PRIGKNKQVS  180
KDKAKQREEL EEKQDQTESK YYISPGRRIG VPSVAPALEL NFSDLPIRPG EKDCSYYMRT  240
GTCKYGINCK FNHPDPTAAG ESHPQSAYGN GRPASLQGLP NSQGINSETT EWNGYQQTQA  300
EELPERPGQP VCFYFAQTGD CXNKSNCQYH HPKNQTAATP SCALSDRGLP LRPSYCTAVA  360
APIALSDKGL PLRPLLVASS QQKPSNPVSA TVAAASAAAI STKTMFFSAA RIALPVSVSV  420
LVLIYQYFKS GRKSEFSEGV EVPLNPTTSV PSXAPSDLER EILDWIRTLD PDMLNKIRNL  480
DPAFLDVIRN FDPAFSSEIS ERVDGPLNPP SVSSPAPSDL DSEILDWIRE LHPAVLDELQ  540
SDPAFLDEIR XFDPSIIDQI XILSLKEKED KEEEEKRRKC EKEKEEEEKR RKCEKEKEEE  600
EKRRECEKEN EKERERESGG GGNENGGEVD KKVVEESSRR NQYPLRPEAK DCSYYLKTGN  660
CKFGSNCKFN HPRIRKNKQV SKDKAKLREE LEKQQDQAES XYYISPGRRV GVPSVAPALE  720
LNFSGLPIRP GEKDCPYYMR TGTCKYETNC KFNHPDPTAA GESRPQSAYG NGRPASSXGL  780
PKSQDXYSET TEWNGYQAPA YLPHRGMPAP PPPPYVMNNS VTETNYYGQY AQQKQAEEXP  840
ERPGXPVCFY FAQTGDCINK SNCQYHHPKN HTPATPSCTL NDRGLPLRPQ TGYGHLEVEV  900
KLMPQFRNSL SNAFCTKCQL EQWILVTKDV KSLCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1576591RRKCEKEKEEEEKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.44751e-146bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948470.10.0zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ9STM45e-63C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A498I3J31e-112A0A498I3J3_MALDO; Uncharacterized protein
TrEMBLM5WWY51e-113M5WWY5_PRUPE; Uncharacterized protein
STRINGXP_008392972.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2758123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-64C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]