PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000270937
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 370aa    MW: 40939 Da    PI: 6.9114
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000270937genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-17197251256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqN+Ra+ k
  MDP0000270937 197 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNKRARTK 251
                    788899***********************************************98 PP
2HD-ZIP_I/II124.45.3e-40197287192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    +kk+rlskeq+++LEesF+e+++L+p++K +la++L l+prqv+vWFqn+RARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  MDP0000270937 197 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNKRARTKLKQTEVDCEFLKRCCETLTEENRRLNKELQELR-ALK 287
                    69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-18187254IPR009057Homeodomain-like
PROSITE profilePS5007116.811193253IPR001356Homeobox domain
SMARTSM003895.8E-15195257IPR001356Homeobox domain
CDDcd000863.67E-15197254No hitNo description
PfamPF000469.8E-15197251IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-16197251IPR009057Homeodomain-like
PROSITE patternPS000270228251IPR017970Homeobox, conserved site
SMARTSM003403.7E-21253299IPR003106Leucine zipper, homeobox-associated
PfamPF021832.0E-10253287IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MELCLSLGGH EEPAERSDQN TTTTTKTTEF CMSLSIGPSC AAGTTSTPHP PPRHEAAAAD  60
KKQDDDDGDH IHVDDHVPLQ LDLLLWPTPP CNQIQNAGVL SMNVINRVEE VVAAASSSHT  120
NSGSSSFQIM DIGSNNHSKG XAGDDLNNNY HNVYNYKRMA HSAEAQGDDE GERASNSRVG  180
SDEVEDDIIN GNTNTSRKKL RLSKEQSAFL EESFKEHHTL NPKQKLALAK QLSLRPRQVE  240
VWFQNKRART KLKQTEVDCE FLKRCCETLT EENRRLNKEL QELRALKATH HSNPFSMQSP  300
ATTLTMCPSC ERTATTANPA SKTTNNTNNN NNNKVESTST TKVQAAKFPL KRPSFYPFFQ  360
PKSHSSSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201SRKKLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375131.20.0homeobox-leucine zipper protein HOX11-like
TrEMBLA0A498JKI80.0A0A498JKI8_MALDO; Uncharacterized protein
STRINGXP_008375131.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1891346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-59homeobox from Arabidopsis thaliana