PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000270344

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

BES1

Protein Properties

Length: 516aa MW: 58712.5 Da PI: 9.3182

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000270344	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	92.9	7.5e-29	6	113	4	110
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasaspesslqssl 98 g +++ E+E++k +ER+R+ai++ki+ GLR++G+y+l r D+neVl+ L++eAGw++e+D tty + p +++ ssa+++ l + MDP0000270344 6 GIGRSESEKEKTKMKERQRKAITTKIFHGLRKHGGYRLSPRGDINEVLRHLATEAGWLIEPDSTTYHpPNTCPRIATNLLRSSAEMQARVTLPGRS 101 5557889***********************************************************942333335888888888877776666555 PP DUF822 99 kssalaspvesy 110 ++++s v y MDP0000270344 102 PDMSIPSVVVLY 113 666666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	8.9E-26	9	96	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Pfam	PF03006	6.5E-68	196	501	IPR004254	AdipoR/Haemolysin-III-related

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MVGTSGIGRS ESEKEKTKMK ERQRKAITTK IFHGLRKHGG YRLSPRGDIN EVLRHLATEA 60 GWLIEPDSTT YHPPNTCPRI ATNLLRSSAE MQARVTLPGR SPDMSIPSVV VLYVFSLKML 120 LNVSFVAETR SLDNQFDCED VNEACLKEAK GKRLWKKVRY QLIEYHSLPG FLRDNEFILG 180 YYRSEWPLKQ VFLSIFSIHN ETLNVWTHLI GFFLFLFLTI YTATKAPDLM DLSSLQRLSD 240 MIRRADLHKI HPELLNCLPS LAFPSMDFLS SVSGNIRELL ANCLPDRFSH ANQTENSILH 300 GVTDDVMNMV APLMNRSITR WPFFAFLGGA MFCLLASSTC HLLACHSARL SYIVLRCDYA 360 GIAALITTSF YPPVYYSFMC NPFFRNLYLS FITVLGITTI VFSLLPFFQG PKFRVYRASL 420 FFVMGVSGVV PLVHKLIVFR NQPEAIQTTG YEVLMGVLYG LGALIYATRV PERWRPGKFD 480 IAGHSHQLFH ILVVAAAYTH YQAGLLYLRW RDLKGC

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MVGTSGIGRS ESEKEKTKMK ERQRKAITTK IFHGLRKHGG YRLSPRGDIN EVLRHLATEA  60
GWLIEPDSTT YHPPNTCPRI ATNLLRSSAE MQARVTLPGR SPDMSIPSVV VLYVFSLKML  120
LNVSFVAETR SLDNQFDCED VNEACLKEAK GKRLWKKVRY QLIEYHSLPG FLRDNEFILG  180
YYRSEWPLKQ VFLSIFSIHN ETLNVWTHLI GFFLFLFLTI YTATKAPDLM DLSSLQRLSD  240
MIRRADLHKI HPELLNCLPS LAFPSMDFLS SVSGNIRELL ANCLPDRFSH ANQTENSILH  300
GVTDDVMNMV APLMNRSITR WPFFAFLGGA MFCLLASSTC HLLACHSARL SYIVLRCDYA  360
GIAALITTSF YPPVYYSFMC NPFFRNLYLS FITVLGITTI VFSLLPFFQG PKFRVYRASL  420
FFVMGVSGVV PLVHKLIVFR NQPEAIQTTG YEVLMGVLYG LGALIYATRV PERWRPGKFD  480
IAGHSHQLFH ILVVAAAYTH YQAGLLYLRW RDLKGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3wxv_A	5e-41	307	501	91	282	Adiponectin receptor protein 1
5lxg_A	5e-41	307	501	91	282	Adiponectin receptor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7021	0.0	bud\| fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269\|PubMed:16263907}.

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in abiotic stress response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009371039.1	0.0	PREDICTED: heptahelical transmembrane protein 4-like
Swissprot	Q9SZG0	0.0	HHP4_ARATH; Heptahelical transmembrane protein 4
TrEMBL	A0A251P442	0.0	A0A251P442_PRUPE; Uncharacterized protein
STRING	XP_008373649.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	5e-12	beta-amylase 7

Link Out ? help Back to Top
Phytozome	MDP0000270344

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Maathuis FJ, et al. Transcriptome analysis of root transporters reveals participation of multiple gene families in the response to cation stress. Plant J., 2003. 35(6): p. 675-92 [PMID:12969422] Hsieh MH,Goodman HM A novel gene family in Arabidopsis encoding putative heptahelical transmembrane proteins homologous to human adiponectin receptors and progestin receptors. J. Exp. Bot., 2005. 56(422): p. 3137-47 [PMID:16263907]