PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000269921 | ||||||||
Common Name | AP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 24269.5 Da PI: 9.3416 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.5 | 2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskR +g+lKKA+E+SvLCda+va+i+fs++gkl ey++ MDP0000269921 9 KRIENKINRQVTFSKRSTGLLKKAHEISVLCDAQVALIVFSNKGKLLEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 95.2 | 1e-31 | 81 | 174 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ + + + +++ e+++Lk+++e Lqr++Rh+lGedL+sL+lk +q+LeqqL+++ k+iR +Kn+l++e+i elq+kek++qe+n+ L kk++e MDP0000269921 81 VEPDFESQGNWTFEYSRLKAKVEVLQRNHRHYLGEDLDSLTLKXIQSLEQQLDTAHKQIRLRKNQLMHESITELQRKEKAIQEQNNLLAKKIKE 174 5555566789*********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.048 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.85E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 1.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.1E-27 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.643 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRSTGLLK KAHEISVLCD AQVALIVFSN KGKLLEYATD 60 SCMEQILERY ERYSYAERQL VEPDFESQGN WTFEYSRLKA KVEVLQRNHR HYLGEDLDSL 120 TLKXIQSLEQ QLDTAHKQIR LRKNQLMHES ITELQRKEKA IQEQNNLLAK KIKEKEKAAA 180 QPQVQNWEQQ NHDLDLLPQP LPCLNIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 9e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 9e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 9e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 9e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2948 | 0.0 | bud| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB458503 | 0.0 | AB458503.1 Malus x domestica MdAP1a mRNA for APETALA1 like protein, complete cds, cultivar: Fuji. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280866.1 | 1e-150 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-115 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | B3GCI5 | 1e-149 | B3GCI5_MALDO; APETALA1 | ||||
TrEMBL | Q6YNE5 | 1e-149 | Q6YNE5_MALDO; AP1-like protein | ||||
STRING | XP_008389388.1 | 1e-149 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 8e-94 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000269921 |
Publications ? help Back to Top | |||
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