PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000269857
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 340aa    MW: 38216.1 Da    PI: 5.0864
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000269857genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.8e-3267121155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +prlrWtpeLH++Fv+av+qLGG +kAtPk+i e+m+v+g+tl h+kSHLQkYRl
  MDP0000269857  67 RPRLRWTPELHACFVDAVNQLGGLHKATPKKIQEAMGVQGITLFHLKSHLQKYRL 121
                    59****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-1666121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-2967121IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-2468122IPR006447Myb domain, plants
PfamPF002496.5E-869120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVGFGCGGDD EQDFQGSSPT PTVTHSSDSV VVEGEEAAAV AEEEEEVDRE TCDLQLPQDR  60
VLAAKLRPRL RWTPELHACF VDAVNQLGGL HKATPKKIQE AMGVQGITLF HLKSHLQKYR  120
LGRHGVKEWR EGTQTCGNKR MSAEIENESA ENHYPLQKLP LQRLRFQVHY LVNAVMFYVL  180
GCGSMHRHSY KLVKEALDEE RDSMQVEASF RVRKLIWELX LINVGRRLHI RQDAERRFMN  240
FAMENACKKL ADQFIGAAXA AAILNGIAGV GTLELYPAYQ MTEGTGMQPS LEGHXTSHGH  300
SENSSVEDFH TRAEDDEKTE ESLDNDPAEA YLINPDPDME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-1967124158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1967124158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1967124158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1967124158Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963943.11e-177protein PHR1-LIKE 3-like
TrEMBLA0A498J8J01e-179A0A498J8J0_MALDO; Uncharacterized protein
STRINGXP_008380089.11e-174(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1890145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.27e-30G2-like family protein