PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000269641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 28566.9 Da PI: 10.0402 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ F r nL+ H r H MDP0000269641 43 FVCEICNNGFQRDQNLQLHRRGH 65 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.62E-6 | 42 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.6E-4 | 43 | 65 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.18 | 43 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.62E-6 | 114 | 139 | No hit | No description |
SuperFamily | SSF53474 | 5.91E-6 | 167 | 235 | IPR029058 | Alpha/Beta hydrolase fold |
Gene3D | G3DSA:3.40.50.1820 | 8.9E-7 | 196 | 235 | IPR029058 | Alpha/Beta hydrolase fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MPRLTLKFGV VEMQTMVKKY QQRFSKADVI ALSLTTLLAT NHFVCEICNN GFQRDQNLQL 60 HRRGHNLPWK LQQRSGKEVK KRVYVCPETS CVHHDPSRAL SDLTGIKKCF CKKHGEKKWK 120 CDKCSKKYAV QSDWNAHPKI CGTREYKCDC GTLSSRRDSF ITHRVFFSHL LSSLIRFTSD 180 GEQKINPKIN GVDGSEANPL NPTSYSILHL VGDLVGLLDH FGGQQAFVVG HGHGALGKEK 240 GDNQKKAKAN LCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-28 | 115 | 179 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 6e-28 | 115 | 179 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622160.1 | 2e-90 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 8e-89 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A498I9V5 | 1e-136 | A0A498I9V5_MALDO; Uncharacterized protein | ||||
STRING | Gorai.003G016200.1 | 5e-89 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 9e-72 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000269641 |
Publications ? help Back to Top | |||
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