PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000269044
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 641aa    MW: 70667.2 Da    PI: 9.6731
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000269044genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.91.4e-1122796383374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf+ AL++r+++s+ ++y+ l++++ +  +s++ ++al+ ++ +sP++kfsh+t 
  MDP0000269044 279 GLLLQCAECVAMDKLDDASDLLPEIAELSSPFGSSPERIGAYFAHALQTRVVSSCLGTYSPLTTKTLTLAQSQRIFNALQSYNSISPLVKFSHFTS 374
                    58******************************************************************99************************** PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    NqaI +a++ge+++H+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +  el++L
  MDP0000269044 375 NQAIFQALDGEDHIHVIDLDIMQGLQWPGLFHILASRTKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFQPLEGKIGSITELNQL 466
                    ***************************************************....9**************************988888999***** PP

           GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                     +kp Ea+++++++  h l+d ++s        L+l+ sl+Pk+++++eq+++h s+sFl rf+eal+yysalfd+l  +l+++s er++vE++l+
  MDP0000269044 467 GIKPSEATVIHWMH--HCLYDVTGSDLA----ALRLLGSLRPKLITIAEQDLSH-SGSFLGRFVEALHYYSALFDALGDGLGADSLERHMVEQQLF 555
                    *************9..888877777777....9*********************.899************************************** PP

           GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    g ei+n++a  g +r+ + + le+W + l+++GF+ v+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  MDP0000269044 556 GCEIRNILAVGGPKRTGEVK-LERWGDELKRVGFRGVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 638
                    **************998887.**************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.30.301.3E-153115IPR014722Ribosomal protein L2 domain 2
SuperFamilySSF501046.02E-153133IPR008991Translation protein SH3-like domain
CDDcd060904.54E-48688No hitNo description
PfamPF017774.6E-3052133IPR001141Ribosomal protein L27e
ProDomPD0093963.0E-2360133IPR001141Ribosomal protein L27e
PROSITE profilePS5098554.79251618IPR005202Transcription factor GRAS
PfamPF035144.8E-110279638IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MVKFLKPNKA VINLQGRYAG RKAVIVRAFD EGTRDRPYGH CLVAGIKKYP SKVIRKDSAK  60
KTAKKSRVKA FVKLVNYQHL MPTRYTLDVD LKDVVNVESL QTKDKKVTAL KEVKKRFEER  120
FKTGKNRWFF TKLSTKSALC VKNLMLSAEL SVRAFGCLSR FSLSLSARKL PSFLYSPHTS  180
SFLLPPSPLP VMLQSLIPQS PIAAANPNIN NPTSSSSSSM KTKRVDRDLA GSGSGDSDAE  240
DPSFTKRLSS GRNFREQTAD DRDTETVEEG ESAGLRLLGL LLQCAECVAM DKLDDASDLL  300
PEIAELSSPF GSSPERIGAY FAHALQTRVV SSCLGTYSPL TTKTLTLAQS QRIFNALQSY  360
NSISPLVKFS HFTSNQAIFQ ALDGEDHIHV IDLDIMQGLQ WPGLFHILAS RTKKIRSMRI  420
TGFGSSSELL ESTGRRLADF ASSLGLPFEF QPLEGKIGSI TELNQLGIKP SEATVIHWMH  480
HCLYDVTGSD LAALRLLGSL RPKLITIAEQ DLSHSGSFLG RFVEALHYYS ALFDALGDGL  540
GADSLERHMV EQQLFGCEIR NILAVGGPKR TGEVKLERWG DELKRVGFRG VSLGGNPAAQ  600
ASLLLGMFPW KGYTLVEENG CLKLGWKDLS LLTASAWQPL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-15728363925380Protein SCARECROW
5b3h_A1e-15728363924379Protein SCARECROW
5b3h_D1e-15728363924379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104115KKVTALKEVKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.167090.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342299.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A498HEB90.0A0A498HEB9_MALDO; Uncharacterized protein
STRINGXP_008342299.10.0(Malus domestica)
STRINGXP_008362328.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]