PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000268306 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ARF | ||||||||
Protein Properties | Length: 893aa MW: 99090.5 Da PI: 6.7171 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.5e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ MDP0000268306 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 218 99*****************************8544444..48************************************************..8899 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ MDP0000268306 219 NQLLLGIRRA 228 999****997 PP | |||||||
2 | Auxin_resp | 116.3 | 2.7e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k+ ka+ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k MDP0000268306 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVChTCISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336 79********************************9846789****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-21 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 3.5E-22 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.548 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-33 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.2E-6 | 757 | 849 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.446 | 760 | 844 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.7E-6 | 761 | 835 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 893 aa Download sequence Send to blast |
MRLSSAAFSP QSQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE 60 VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDG YLPAGLGSPN 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVCHT CISVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEVEPLT 360 TFPMYPSTFP LRLKRPWPPG LPSFNGMRDN DLGMNSQLMW LQGNNGDRGM QSLSFSGMGI 420 TPWMQPRLDA SMIGLQPDMY QAMAAAALQE MRAVDPSRLL PTSHLQFQQP QSLPNRSAAL 480 MQPQMVQVSQ SQQPFLQGVQ EHHRQSQPQV QTQSHLLQQQ FQHQNSFSNQ QQQQLVDHQQ 540 IPSAVSSMTQ FASASQSQSP SLQVVTSLCQ QQSYSDSNGN PATSTILSPL HSLMGSFPQD 600 ESSHLLNLPR TNQLISSDGW PSKRAAIDPL SSGVTQCILP RAEQLGPPHI TMSQNSISLP 660 PFPGRECSLD QEGGTDPQSH LLFGVNIESS PLIMQSGMSN LRGVGSNCDS TTLHFPSSNY 720 MSTGGTDFSL NPAVTPSSCI DESRFLQSPE NADRGDPLNR NFVKVYKSGS FGRSLDITKF 780 SSYQELRNEL ARLFGLEGEL DDPVRSGWQL VFVDRENDVL LLGDDPWPEF VNSVWCIKIL 840 SPQEVQQMGK RGLELLKSVP NQRPPNNICD DYGSRQDSRN LSSGITSVGS LEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 11 | 357 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11074 | 0.0 | bud| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. {ECO:0000269|PubMed:16107481}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008371645.1 | 0.0 | auxin response factor 6 | ||||
Swissprot | Q9ZTX8 | 0.0 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A498IXP5 | 0.0 | A0A498IXP5_MALDO; Auxin response factor | ||||
STRING | XP_008371645.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000268306 |