PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000268133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HB-other | ||||||||
Protein Properties | Length: 938aa MW: 104487 Da PI: 9.5837 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.1 | 4.6e-06 | 207 | 267 | 7 | 55 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 f +++++e+e+ ++ n ps+e A+k ++ +qV +WFqNrR+ MDP0000268133 207 FVQSEVTEMEAILQQynNTMPSREVLMAVADKFsesperkgkiTVQMKQVWNWFQNRRYAI 267 6677788888888866588999999999999999999999988999************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57783 | 5.95E-8 | 1 | 40 | No hit | No description |
Pfam | PF05129 | 4.5E-8 | 2 | 38 | IPR007808 | Transcription elongation factor 1 |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 206 | 272 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-9 | 206 | 271 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.41 | 206 | 270 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 1.5E-39 | 323 | 449 | IPR032001 | SAWADEE domain |
Gene3D | G3DSA:3.90.180.10 | 2.1E-35 | 576 | 754 | IPR011032 | GroES-like |
CDD | cd05289 | 7.67E-79 | 577 | 935 | No hit | No description |
SuperFamily | SSF50129 | 1.73E-26 | 577 | 631 | IPR011032 | GroES-like |
SMART | SM00829 | 8.4E-11 | 585 | 935 | IPR020843 | Polyketide synthase, enoylreductase domain |
SuperFamily | SSF50129 | 1.73E-26 | 662 | 754 | IPR011032 | GroES-like |
SuperFamily | SSF51735 | 7.1E-28 | 722 | 912 | IPR016040 | NAD(P)-binding domain |
Gene3D | G3DSA:3.40.50.720 | 3.5E-14 | 755 | 840 | IPR016040 | NAD(P)-binding domain |
Pfam | PF13602 | 8.7E-19 | 792 | 935 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 938 aa Download sequence Send to blast |
MGKRKAKAKP AARKRTDKLD TVFCCPFCNH GSSVECRMLS VAFAKRISAQ PSQTCXCFDH 60 KVWIVMVYGQ KRTALGXLGI XRLEXLXRXS INLTLVESSV VLQRKESAGK YVPXFQLSTD 120 EPYLCVGCER SSFEPRRQII CEXKWLGIVC GLTLTLRIFR KPNSPVSVSK INTNLKFSLA 180 RLSSERRERE RAAMGRPPSN GGPTFRFVQS EVTEMEAILQ QYNNTMPSRE VLMAVADKFS 240 ESPERKGKIT VQMKQVWNWF QNRRYAIRAK SSKVLGKLDX SPMSRDDSAA ARNVPQGPQQ 300 IAAPVHVPSV PGSGKGASEN AIFEFEAKSG RDGAWYDVAN FLSHKNLETV NPEVLVRFAG 360 FGPEEDEWVN VRKHVRQRSL PCESSECVAV LPGDLILCFQ EGKEQALYFD AHVLDAQRRR 420 HDVRGCRCRF LVRYVHDQSE EIVPLRKVCR RPETDYRLQQ LHAVNEAISA EQKSMEQYMA 480 SATSGEMMQK QQNAVPPTFY VTASLPTQTT TPELRRSEIS TVVRSGNSSA XLSSSTLLGF 540 DLKATMRILR PRSFRASVSE SNHHLKVRFR RFVTSCRAVV LPRFGGPEVL ELRPVVQVPD 600 LKPHEVLVRA RAVSINPLDT RPRDDLSAXI XTHIEFFVFI FVXRLRLQMR SGYGRSIFGP 660 HLPLILGRDI SGDVAAVGDS VRGLSVGQEV FGALHPTAVR GTYADYAILS EEELAPKPTS 720 VTHVEASAIP FASLTAWRAL ISTARIAEGQ RLLVVGGGGA VGLAAIQISV ARGCXVTTTC 780 GKQSIDRVLA AGAEQAVDYT AEXIEFTIKG KFDAVLDTIG GPETERICIN LLKRGGHYMT 840 LQGDAASLAD SYGIAIGLPX ATAVLLKKQI QYRYSHXIEY WWTYMRADSE GLDEIRRLSE 900 AGKLNXPVEK TFPITQVIEA HEAKEKKQIH GKIVLELD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vn8_A | 7e-47 | 578 | 937 | 24 | 374 | RETICULON-4-INTERACTING PROTEIN 1 |
2vn8_B | 7e-47 | 578 | 937 | 24 | 374 | RETICULON-4-INTERACTING PROTEIN 1 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.121 | 3e-67 | bud| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-124 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | MDP0000268133 |