PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000266986
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 458aa    MW: 51651.6 Da    PI: 5.8932
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000266986genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.41.1e-133444531374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA +v+sg+ e+a+  L +  +laspdgd+mqR+aayfteALa r+++  ++l kal++++ s  ++see+ +++lf++++P+lk++++
  MDP0000266986  44 LIQLLYACASHVASGSIENANIWLDQTCQLASPDGDSMQRIAAYFTEALADRMLKGLPGLHKALNSTKIS--SVSEEILVQRLFFDLCPFLKVAYV 137
                    689*************************************************************999998..6*********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    ++NqaI+ea+ege++vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke l ++  rL++ Ae+l++pf+fn+ ++++le+l++e
  MDP0000266986 138 VTNQAIVEAMEGEKMVHIIDLHSCEPAQWINLIQTLNARPEGPPHLRITGIHE----QKEVLDQMFLRLTEEAENLNIPFQFNA-IVSKLENLDIE 228
                    *****************************************************....9**************************.7999******* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll............................................desvsles.erdevLklvkslsPkvvvvve 243
                    +Lrvk+gEalaV++vlqlh+ll                                             +++s++s +  ++L  +++lsPk++v++e
  MDP0000266986 229 SLRVKTGEALAVCSVLQLHSLLasdddhrxktpxxsknlqkvlhmnkltlgewlekdpingspdsaLSPLSSASpKMGSFLTSLWGLSPKLMVITE 324
                    ***************************************************************9984444444446778***************** PP

           GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                    qea+hn++++++r++eal++y alfd+le++++r   er+kvE+ l+g+ei+n++aceg+er+erhe+lekW  rle aGF+ vpls++ + qa  
  MDP0000266986 325 QEANHNGHTLMDRIMEALYFYGALFDCLESTVSRSPMERQKVEKLLFGEEIKNIIACEGTERTERHEKLEKWILRLELAGFGRVPLSYNGMLQATE 420
                    ************************************************************************************************ PP

           GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    llr ++  gy+++e++g++v++W+drpL+s+S Wr
  MDP0000266986 421 LLRGYD--GYKIKEHNGCVVICWHDRPLFSISGWR 453
                    *****9..**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.20318435IPR005202Transcription factor GRAS
PfamPF035143.7E-13144453IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAQEDGSPVT SSALQFFPWL SPGIGSPYSP WLRELKSEER GLCLIQLLYA CASHVASGSI  60
ENANIWLDQT CQLASPDGDS MQRIAAYFTE ALADRMLKGL PGLHKALNST KISSVSEEIL  120
VQRLFFDLCP FLKVAYVVTN QAIVEAMEGE KMVHIIDLHS CEPAQWINLI QTLNARPEGP  180
PHLRITGIHE QKEVLDQMFL RLTEEAENLN IPFQFNAIVS KLENLDIESL RVKTGEALAV  240
CSVLQLHSLL ASDDDHRXKT PXXSKNLQKV LHMNKLTLGE WLEKDPINGS PDSALSPLSS  300
ASPKMGSFLT SLWGLSPKLM VITEQEANHN GHTLMDRIME ALYFYGALFD CLESTVSRSP  360
MERQKVEKLL FGEEIKNIIA CEGTERTERH EKLEKWILRL ELAGFGRVPL SYNGMLQATE  420
LLRGYDGYKI KEHNGCVVIC WHDRPLFSIS GWRFRRYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-61274552381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952127.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A498KD160.0A0A498KD16_MALDO; Uncharacterized protein
STRINGXP_009354422.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]