PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265616
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 340aa    MW: 39298.7 Da    PI: 9.1678
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265616genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.48.2e-211683012128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykv.ePwdLpkkvkaeek...ewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                    p  f F+Ptd+e++  +L + + +++    + +e ++e d++++ ePw++ +++ ++++   ++yfF++ ++ ++tg r +r + +g+W+++  +k
  MDP0000265616 168 PYAFCFQPTDQEIIRSFLYRMAVKRElllPPYNEYVHEEDLFDFkEPWEIWEEYGGDDHfnqDLYFFCELERLSPTGLRIRRNIGEGIWSEKQPTK 263
                    67899****************99999887667778*******9889****86655554454478******************************** PP

            NAM  91 evlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                     v++++g+   +g kk + +y++r ++ e+  W+++ey+l
  MDP0000265616 264 LVYNEDGHPnpMGRKK-MFLYENRGSE-EHGGWILDEYSL 301
                    ****955543266655.5566666666.799*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-24158327IPR003441NAC domain
PROSITE profilePS5100524.746167329IPR003441NAC domain
PfamPF023653.9E-12169301IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVKPAVNGMD KSRRRVDQSK IGNLDLIRVH NLNHVWSGVV QLTLAELFPP RSTLAVNCAV  60
VTEKKLKKSH KKGQEIQTRV ARINGMEEEG KVAGEVEAPD NTIPTPTPTP TPTPTRPLLR  120
LLAYKYHWSL ALSSHQNXSK HIQKQEPRTY FTFLFVFAMV GPLVTLVPYA FCFQPTDQEI  180
IRSFLYRMAV KRELLLPPYN EYVHEEDLFD FKEPWEIWEE YGGDDHFNQD LYFFCELERL  240
SPTGLRIRRN IGEGIWSEKQ PTKLVYNEDG HPNPMGRKKM FLYENRGSEE HGGWILDEYS  300
LLVGADGRAQ TASKDRYEFP SVICRLRKND KSGGKKKRNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498IQA81e-133A0A498IQA8_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12591634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.15e-12NAC domain containing protein 102