PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265555
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 402aa    MW: 45211.6 Da    PI: 8.357
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265555genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26256321156
        G2-like   1 kprlrWtpeLHerFveaveqLGGse..........kAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k+r++W+peLH+ Fv+ ++qLGGs+          +AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  MDP0000265555 256 KQRRCWSPELHRTFVNTLQQLGGSQvsylrfydlaVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 321
                    79*********************97444433333369***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-14253324IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-26253324IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-21256321IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSSVPPELSL DFRPTFVPKT ISDFLKEVSM IGNVSERMSK LDDFVNRLED EMRKIDAFKR  60
ELPLCMFLLN DAIRALKEEA MQCTAPDIQP VLEEFIPMKN DCGKNKGGSS NNNKKEKDSR  120
DKKNWMSSVQ LWNTDNYQQH PSSDFPYDQK RVSEIVSKRN EAENEDPFQT CRNRTGGKAF  180
MPFKGYPAFS VTPVRLEEKE ELPVRGLSLL TPGIKNPKEE STSSGSRSTC GRSTSFSTAN  240
AQSNMRTLPQ QPTSRKQRRC WSPELHRTFV NTLQQLGGSQ VSYLRFYDLA VATPKQIREL  300
MQVDGLTNDE VKSHLQKYRL HTRRVPGAST AAPKNQAVVL GGLWTSHDRY TDSSKASSSQ  360
SGSPQGPLQL TGTGGDDEDD EDAKSESHSW KGHIHKPGKD DV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.54380.0bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339250.10.0transcription factor HHO6-like
TrEMBLA0A498J1A40.0A0A498J1A4_MALDO; Uncharacterized protein
STRINGXP_008339250.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-49G2-like family protein