PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000265359
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 342aa    MW: 37214.8 Da    PI: 5.6247
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000265359genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G+g Wk I +          R+  ++k++w++ 
    MDP0000265359  5 KQKWTVEEEEALRAGVRKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRNM 56
                     79***********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.739161IPR017930Myb domain
SuperFamilySSF466896.46E-17265IPR009057Homeodomain-like
SMARTSM007177.7E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-15556IPR009057Homeodomain-like
PfamPF002492.9E-9556IPR001005SANT/Myb domain
CDDcd116602.40E-24657No hitNo description
SMARTSM005261.9E-9174239IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150416.896176244IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.92E-10178248IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-9178241IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.5E-6180236IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGNPKQKWTV EEEEALRAGV RKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMTVSS  60
TGPREKSRPK ARTNPDVAVA SVSVPQTSSA APVRRDSPAA AAATPARRDS PAAAPVGLDS  120
PAAAPVGRDS PAEAPVRRDA PAATPFKREP STETPVRRDT TPVADDSSTG LSDAIPAPVC  180
NAMIFEALAA XTDPNGLDTS AIASFIEQRN EVPQNFRRSL TGRLRRLVQQ DKLEKIQQCY  240
KVKTDPLSVM KAPAPMQNDI QPKQSQSPVY VTVGSDTLEE SARAAAQSIA EAEYKSYLAA  300
EQMKEAERIS FMVEDTESML XLANEILEQC NIXNSELFXP IA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.83801e-153bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285385e-48FR828538.1 Rosa rugosa mRNA for putative MYB transcription factor (myb5 gene).
GenBankFR8285475e-48FR828547.1 Rosa rugosa mRNA for putative MYB transcription factor (myb14 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388202.20.0single myb histone 4-like
TrEMBLA0A498KL950.0A0A498KL95_MALDO; Uncharacterized protein
STRINGXP_008388202.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.39e-25telomere repeat binding factor 1