PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000265298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | SBP | ||||||||
Protein Properties | Length: 256aa MW: 28563.8 Da PI: 4.7223 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 99.3 | 3.3e-31 | 138 | 203 | 1 | 66 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTT CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrL 66 +C+++gC++dls+ak y+rrh vCe hskap v+vsgl++rfC +Csrfh+lsefD++k+sCrr+L MDP0000265298 138 ICKADGCAVDLSDAKVYNRRHTVCELHSKAPLVIVSGLKRRFCHKCSRFHDLSEFDDTKQSCRRHL 203 5***************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-28 | 134 | 200 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.529 | 136 | 213 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.01E-29 | 137 | 205 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-24 | 139 | 203 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAKSEVRLNA LSVEGTRDLT ETLDPEANIM VGWQNVEDSW VAQSKTEHPS RTLGLDAMNM 60 QVGARSMEET SVSHVEEGLK RIQCEEVSEP DAPFRELKED VLKDEEDEEL DVQVEDHHDR 120 KKKGAESVTG ASGVRMAICK ADGCAVDLSD AKVYNRRHTV CELHSKAPLV IVSGLKRRFC 180 HKCSRFHDLS EFDDTKQSCR RHLPYIGTQV KDVSGDIDTV IGRIEWSGVV QSQNDQSEIK 240 DSYEVVEATP PAVGLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-25 | 129 | 204 | 3 | 76 | squamosa promoter binding protein-like 4 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959573.1 | 1e-168 | uncharacterized protein LOC103413440 isoform X1 | ||||
Refseq | XP_028959574.1 | 1e-168 | uncharacterized protein LOC103413440 isoform X2 | ||||
TrEMBL | A0A498JL74 | 1e-145 | A0A498JL74_MALDO; Uncharacterized protein | ||||
STRING | XP_008338363.1 | 1e-164 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38325 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 2e-28 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000265298 |