PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264187
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 341aa    MW: 37596.6 Da    PI: 10.1486
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264187genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-20151201256
            AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g+
  MDP0000264187 151 NYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRGA 201
                    59*******.**********32....25**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-16150209No hitNo description
PROSITE profilePS5103222.893151208IPR001471AP2/ERF domain
PfamPF008475.6E-14151200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-29151208IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21151208IPR016177DNA-binding domain
SMARTSM003809.5E-32151214IPR001471AP2/ERF domain
PRINTSPR003671.6E-10152163IPR001471AP2/ERF domain
PRINTSPR003671.6E-10174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNNQTLATVP LYSNPVMFHA QPETFRFLTE TNSLYESYLR KAHFSDSTIS IPTQLKNFNQ  60
PSHTNISAEV PLVGVIDKGP ESQAQAPPVL DGIAAVVGQH VLFGKKNSNT SYNGESSLIP  120
DFGYVSERLG AAETSIKHAD NKKSNFPVQK NYRGVRKRPW GRWSAEIRDR IGRCRHWLGT  180
FDTAEEAARA YDAAARRLRG AKARTNFEIP SVFPLSLHCS PPSSSEAKRV RSAKRPPKGS  240
KSNRKCSVVT SVAHLFSEAP TDLRSSQVKI RNVELDLKIG VGVMMMCVDS RDWSSSWSLA  300
RCKPLSSTSM TTSMGPFFTA LMYLIADCTE ISGSEKGGST K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-17150209161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365469.20.0ethylene-responsive transcription factor ERF084
SwissprotQ9M8M52e-26ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A498HEZ30.0A0A498HEZ3_MALDO; Uncharacterized protein
STRINGXP_008365469.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-23ERF family protein