PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000264124
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 278aa    MW: 30539 Da    PI: 4.8272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000264124genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-184190255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++ +++++g
  MDP0000264124 41 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRSARSMRG 90
                   678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-3341104IPR001471AP2/ERF domain
PROSITE profilePS5103220.2974198IPR001471AP2/ERF domain
CDDcd000181.81E-294297No hitNo description
SuperFamilySSF541712.16E-204299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-284298IPR001471AP2/ERF domain
PRINTSPR003673.5E-84253IPR001471AP2/ERF domain
PfamPF008478.6E-114290IPR001471AP2/ERF domain
PRINTSPR003673.5E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDFFTNSPSK SNNSPPSSTK TKRKQQRQQT QQPQQTQQET RFLGVRRRPW GRYAAEIRDP  60
STKERHWLGT FDTAEEAALA YDRSARSMRG SKARTNFVYS DMPHGSSVTS IISPEEDMSA  120
FFTTPLPQTH AQSQTHTQQS FFTHQDPFDA YSFSGSSSAE YESGSYVPAF GVVADESGLQ  180
SQSHTHELPP LPACVSSSTC YGPEGGIMSS DGVWNESGFY EFSDPTTNNG LDSLVSGSYV  240
GFDSNEFVQH SPLFGSMPPV SEAGIDGFDL GSSSAYFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-194297359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369663.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A498HP730.0A0A498HP73_MALDO; Uncharacterized protein
STRINGXP_008369663.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-43ERF family protein