PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263961
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 352aa    MW: 39497.5 Da    PI: 8.8288
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.31.4e-27183243159
                    ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ k+++  pr+Y+rC++a +Cpvkkkv+r+ ed ++++ tYegeHnh+
  MDP0000263961 183 VKDGYQWRKYGQKVTKDNPsSPRAYFRCSFApRCPVKKKVQRCIEDDSILVATYEGEHNHD 243
                    58**************997369********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-28174244IPR003657WRKY domain
PROSITE profilePS5081123.089178245IPR003657WRKY domain
SuperFamilySSF1182903.01E-23180243IPR003657WRKY domain
SMARTSM007743.8E-32183244IPR003657WRKY domain
PfamPF031065.6E-23184243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAYLEGTLAS RLYLGRANSS VTDLARRVLH DEGFVFGPFF SKFLVSSLPL VNIIVISAIC  60
RFLNLYINLS ESINMDAHTL NKQKVVDSVP EDLQRLRKEN ETLRFLLQVM TAKCSTLEQQ  120
QLRXMHIQQQ PCDHRHIMTT NINSAIMSKR QRTDEHRYQF PASHDKTSQF LVKTDSKDNS  180
LIVKDGYQWR KYGQKVTKDN PSSPRAYFRC SFAPRCPVKK KVQRCIEDDS ILVATYEGEH  240
NHDAINDSAL FGQFSCSHKN IIVPVNFPSS GIGTNNDVIN ISPSPPEPVT LDLSLSGSSN  300
QENGGLGSPQ SMVSSRRVED YVASLTKDPD FTQTLVAAVA RSIARPANRP NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-181822431372WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347492.20.0probable WRKY transcription factor 40
TrEMBLA0A498J9J20.0A0A498J9J2_MALDO; Uncharacterized protein
STRINGXP_008347492.10.0(Malus domestica)
STRINGXP_008357270.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-39WRKY DNA-binding protein 40