PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263766
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 722aa    MW: 79355.5 Da    PI: 8.7795
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263766genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.3e-4097173278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    C v+gC++dls++++yhrrhkvCe hsk+p+v+++g +qrfCqqCsrfh+ +efDe+krsCr+rL++hn+rrrk+q+
  MDP0000263766  97 CLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTINGNKQRFCQQCSRFHAPEEFDEGKRSCRKRLDGHNRRRRKPQP 173
                    **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-3290158IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.20594171IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-3895176IPR004333Transcription factor, SBP-box
PfamPF031102.4E-2997170IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MDWNLKAASW DLPELEQGTF SNLDTIVDGS SSFGDHRTFK GSNFSVDLKL GQLGGSGNNE  60
LVGMLKEPGG LKTTSSSPSG PLKRSRAAYS GSQMVSCLVD GCNSDLSTCR DYHRRHKVCE  120
LHSKTPQVTI NGNKQRFCQQ CSRFHAPEEF DEGKRSCRKR LDGHNRRRRK PQPEPLSRPG  180
SFLSSYQGTQ LLPFSSSLVY PSTNVINPTW ATGIVKTEPD PGVHNLQLPL IDKQNMFLGS  240
SVSTSSSGYK GGKQFSLFQS SNSSPLHHNH QTSHHHGTSV CQPLLNTISF SETASGGGGT  300
TKSKMFCDRL TTQIHDSDCA LSLLSSPQTQ QTSEIGLRHT VQQPNSISLM QQRLGPNGLR  360
RNNSSMEPMD SVMVSNGSGD ANRQSRGGKG NSMAVEQLKI GREQGVFSRV DDEILQNILG  420
RLPGVEFSSA VGVNTNWNKN FGQMLSRPKF SSALSLNPDL HVNWAQGNYA RNAETIHRGI  480
VVSVGYVPGL RVEVNWAQGN XARNTKTIHR GIVVSVGYVP GLRVEVFPQP SPRHVNWAQG  540
NSARNTKTIH RGIVVSVGYV PGLRVEVFPQ PSPRHVSFVA MLRSMGYGHF ILVDGVGIQP  600
DDVFFFYHSD AATALNXIDY ASDNLQTFVH NDSEIQPEVF GGFIFSSKKR GALMFDRPNV  660
DCKPFADNFP GVPVARMFGN KEIACGEEED NELDHPRSVH ACSSMYLAMN YVPPQAPYYL  720
KE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-28971701184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153170KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136050.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281011.10.0squamosa promoter-binding-like protein 13A
RefseqXP_008374225.10.0squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_028959524.10.0squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A2R4QL790.0A0A2R4QL79_9ROSA; SPL domain class transcription factor 2
TrEMBLD9ZJC10.0D9ZJC1_MALDO; SPL domain class transcription factor
STRINGXP_008374224.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-65SBP family protein