PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263713
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family YABBY
Protein Properties Length: 439aa    MW: 49820.1 Da    PI: 9.1896
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263713genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY167.49.9e-5224238721169
          YABBY  21 ilavsvPstslfkv.vtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111
                     + vsvP +sl+++ vtvrCGhC+ llsvn++kas    +lla+        ++e++eel  ee+  k+n    +s+s  +s+   s+nede++  
  MDP0000263713 242 CFQVSVPCSSLSMLaVTVRCGHCSCLLSVNMMKASfvplHLLASLT------QDEQKEELCLEEMVEKQNSLDMRSPSMVISN---SDNEDEDMIS 328
                    589********98659**************9998833333333333......3445555555555555555555556665555...8899999998 PP

          YABBY 112 vpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                    + p v++PPekrqr+Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP+i ++
  MDP0000263713 329 MNPiVNKPPEKRQRAPSAYNRFIKEEIRRLKAENPSMTHKEAFSTAAKNWAQFPPIQYK 387
                    88879***************************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002133.0E-35172IPR000626Ubiquitin domain
SuperFamilySSF542362.96E-34193IPR029071Ubiquitin-related domain
CDDcd018032.89E-53176No hitNo description
Gene3DG3DSA:3.10.20.907.7E-51187No hitNo description
PROSITE profilePS5005330.452176IPR000626Ubiquitin domain
PfamPF002402.6E-33374IPR000626Ubiquitin domain
PRINTSPR003486.7E-381131IPR019956Ubiquitin
PROSITE patternPS0029902752IPR019954Ubiquitin conserved site
PRINTSPR003486.7E-383252IPR019956Ubiquitin
PRINTSPR003486.7E-385374IPR019956Ubiquitin
SuperFamilySSF578292.01E-20100154IPR011332Zinc-binding ribosomal protein
SMARTSM014023.1E-28102147IPR002906Ribosomal protein S27a
PfamPF015997.2E-27102147IPR002906Ribosomal protein S27a
PfamPF046901.8E-50242386IPR006780YABBY protein
SuperFamilySSF470951.11E-8333383IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.1E-6335383IPR009071High mobility group box domain
CDDcd000841.70E-4342383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0007275Biological Processmulticellular organism development
GO:0005794Cellular ComponentGolgi apparatus
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN  60
IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL AVLQFYKVDD SGKVQRLRKE  120
CPNAECGAGT FMANHFDRHY CGKCGLTYVY QKAGVQQPPK DRFGQTRTGM ALVVVRSLVV  180
SNRPFRNTID YITATSQSCR YYLVSNRPFT LSNLSIDPFH SSPATVYNLV PLYSIPTTYT  240
VCFQVSVPCS SLSMLAVTVR CGHCSCLLSV NMMKASFVPL HLLASLTQDE QKEELCLEEM  300
VEKQNSLDMR SPSMVISNSD NEDEDMISMN PIVNKPPEKR QRAPSAYNRF IKEEIRRLKA  360
ENPSMTHKEA FSTAAKNWAQ FPPIQYKEDG PDGESCTCSE LREENVAWES DMPEAVQDGN  420
GFRERKAPRH SIWARTPFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bf5e-831153115540S ribosomal protein S31e
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17280LRGGAKKRK
27781KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.3911e-171bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3865240.0AF386524.1 Pyrus communis ubiquitin extension protein (UBI) mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.17e-64YABBY family protein