PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263654
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 802aa    MW: 90162.8 Da    PI: 6.7201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263654genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-14501581187
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                    f+k +++s+v++  +l+lpk+f++ +       + tltle e g++++v++   + ++  + ++GW++F  an+L +g  +vF+l++ 
  MDP0000263654 501 FVKSMIRSNVSSCFCLTLPKQFCQLYlP---LHDATLTLEVEGGEKYRVTF--LGERR--IVSAGWQKFSTANKLLVGNLLVFRLVRP 581
                    89*********************88853...34679***************..66653..4688********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18202.6E-432138IPR029058Alpha/Beta hydrolase fold
PfamPF057058.3E-934248IPR008547Protein of unknown function DUF829, TMEM53
SuperFamilySSF534747.66E-637140IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:2.40.330.102.3E-14498584IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-18499585No hitNo description
SuperFamilySSF1019363.92E-17499585IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-15501587IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209501592IPR003340B3 DNA binding domain
PfamPF023621.2E-11501582IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MWSGGGASGS CGGDGGGGGI YWGRKEEVSH SKGIVVIFAW VSIHERHLQN HVDLYSSLGW  60
NSLVCHSHFL HAFYPEKAMS FAFVILNELV ESLGAPFLIL CSDKDDLAPY HIICNFTHRL  120
QELGGDVKLV KLNGSPHLGN TLKSINVLLE LSETLWAPSY LGQIENHYKY YPIQYRSSVT  180
HFLEKAALVF SQRIKELEGD NTSMEGMQDE ISELICDLRK AAVNSNQSLR RVAVEPSDHF  240
FLPSSAENQN RIHLLVVSKA FVAQDYDFCY GLAVNATMLA RIEANVGGEA KSFRNVYEYL  300
CIETCHFDLP ISRMTTSDKS RLFTCFGLGE AMKNFNLPVA TVKLSVCQTP MAMAVMQDCR  360
HPQNFTLAMN VKEEEEELSD SEYFPEEKED DEDHGEAESL TVSQFRLRSR PKSLHSPPPL  420
VGVEQMEQTL ETKQNVLSTW RRPTRPTHIT KRKVPGHPQK HGDGGCKRKR TIFDSFKDHE  480
ISFVRNQVQD IQANLGADPV FVKSMIRSNV SSCFCLTLPK QFCQLYLPLH DATLTLEVEG  540
GEKYRVTFLG ERRIVSAGWQ KFSTANKLLV GNLLVFRLVR PLKFKKKHLM TPPRDVSQGN  600
IQKKSSKLGT NPELVANQSE DDNEDFASNL AADITFRGPA ADFEDVRMID NFTILVNGVT  660
IDTQLSAQVR TIYYDLCCSQ GSFLHDNLLK SIDSKLAAEI ITETTNIANA IRACKLPPSR  720
ADYVMQEKTL HAFELLGMDV GFLRARLKQC LSIASKYEVA AESKRYLEGK VEQVCTREKI  780
RDLDSKLSEL KETMENVGIS HT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450469KRKVPGHPQKHGDGGCKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.91931e-146bud| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385749.20.0B3 domain-containing protein Os01g0234100-like isoform X2
STRINGXP_008385747.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-21B3 family protein