PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000263485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 153aa MW: 17667.2 Da PI: 9.589 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.9e-09 | 123 | 146 | 1 | 24 |
--S---SGGGGTS--TTTTT-SS- CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFa 24 ++ ++C +++rtG C yG+rC+++ MDP0000263485 123 PGVPNCVYYMRTGLCGYGGRCQYN 146 5789******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.084 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.469 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.11 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-6 | 124 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
VHYVAQSCFV RRLDSSRKSE EVRIAKEVEA HELRIRKELE KQEIVRRKGV QPCTFYLQNG 60 QCKFGFXXKF DHRVQTMRYN LSASSLVDMP VVQYPVGFLL AXXAPSSSSL DLRPRSESYS 120 ERPGVPNCVY YMRTGLCGYG GRCQYNQPRD RSA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12211 | 2e-92 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017192654.1 | 4e-32 | zinc finger CCCH domain-containing protein 32-like isoform X3 | ||||
Refseq | XP_028956222.1 | 9e-32 | zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
TrEMBL | A0A498JKW5 | 7e-44 | A0A498JKW5_MALDO; Uncharacterized protein | ||||
STRING | XP_008374312.1 | 1e-48 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 2e-17 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000263485 |