PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263292
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 332aa    MW: 36874.9 Da    PI: 7.4447
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263292genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.4e-32145198255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MDP0000263292 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198
                    9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-15142199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-28143199IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23145198IPR006447Myb domain, plants
PfamPF002492.1E-7146197IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMKNTSLPLP DLSLQISPPS SADDLPYDIG VTRKALYSTD RSSATDSGSS GSDLSQENGF  60
YHLERSSSYN LASADEEPKL SLGFDEMKDH HHHMASPLPP ALQMPXNFNS NHYLNHHHHQ  120
PQIYGREFKR SARTVGGVKR SIRAPRMRWT TTLHAHFVHA VQLLGGHERA TPKSVLELMN  180
VKDLTLAHVK SHLQMYRTVK STDNKGTGHE GQTDMDLNQN PGTKPALQIN AQLSCEKANI  240
NRGSWPSSTE MNGSSNLRHG HGLAYTHSPP SNGTKVEKED SGHHVYDQSM KERPMLDCGS  300
LASSDMYLNL EFTLGRPSGE WTVLNSLNLQ MT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16146200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16146200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16146200357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16146200357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16146200458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16146200458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2834731e-116KP283473.1 Prunus incisa isolate 462-2010A aberrant testa shape (ATS) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377374.20.0probable transcription factor KAN4
TrEMBLA0A498J6790.0A0A498J679_MALDO; Uncharacterized protein
STRINGXP_008377374.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-60G2-like family protein