PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000263008
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 279aa    MW: 30534.1 Da    PI: 5.0729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000263008genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-194089255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  MDP0000263008 40 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 89
                   678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.43E-313996No hitNo description
PROSITE profilePS5103220.7054097IPR001471AP2/ERF domain
SMARTSM003806.6E-3540103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-294197IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-214198IPR016177DNA-binding domain
PRINTSPR003673.5E-84152IPR001471AP2/ERF domain
PfamPF008474.1E-124189IPR001471AP2/ERF domain
PRINTSPR003673.5E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDFFTASPSK SNNSPSSSSK TKRKQQQQQT QQPQTQQETR FLGVRRRPWG RYAAEIRDPS  60
TKERHWLGTF DTAEEAALAY DRAARSMRGS KARTNFVYSD MPHGSSVTSI ISPDESQRDM  120
SAFFTTPLPQ THSQSQTHTQ QPIFTHQDPF DAYTVSGGSS TEFGSGSYGP ISGVVADESG  180
YQSQSHTHEL PPLPPCVSSS TCYEPEGIMS SDGVWNESGF YGFSQPTTNN GLDSLVSGSY  240
VGFDSNEFVQ HSPLFGSMPP VSDAGIDGFD LGSSSAYFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-204196359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390226.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A498HP731e-145A0A498HP73_MALDO; Uncharacterized protein
STRINGXP_008390226.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-37ERF family protein