PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000262886
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 304aa    MW: 33078 Da    PI: 4.477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000262886genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002278301123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C+ C+ksF++   L +H +  H
  MDP0000262886 278 HSCKTCSKSFNSDGALSSHNKAkH 301
                    79*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.637278304IPR007087Zinc finger, C2H2
PROSITE patternPS000280280301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAHQSHFEED ICLTRSCSME FWGVEVKAGE PLKVVPEESY VIHLSQATLG ELKKGGDQCV  60
IHVKVGDQKL VLANLSSDKM PQIPFDLVFD KEFELSHNLK SGSVHFCGYQ TYIANESDED  120
QSDFDSESEE DLPLNFTGNG NIVEAKPAPP KTNTVKPESS GKQKVKIEEP IKDEDDSDDS  180
DEDDSDDDES SDEDMLGADS SDEDDEDSEE EEDTPTPKKD SKKRPNESAP KTPVSAKKAK  240
QVTPQKTDGK KGAHTATPHP VKKGGKTPQT PNSAGGDHSC KTCSKSFNSD GALSSHNKAK  300
HGAK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.23510.0bud| cell culture| fruit| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355217.20.0histone deacetylase HDT1-like
SwissprotQ6V9I63e-66HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A498J4Z70.0A0A498J4Z7_MALDO; Uncharacterized protein
STRINGXP_008363529.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-34histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]