PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000262710
Common NameAP2D54
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 235aa    MW: 25057.8 Da    PI: 4.6685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000262710genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-1570119155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+ +l+g
  MDP0000262710  70 PVYRGIR-CR-NGKWVSEIREPRK---TTRIWLGTYPKPEMAAAAYDVAAIALKG 119
                    68****9.66.7*********843...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-970119IPR001471AP2/ERF domain
SMARTSM003801.2E-2571133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-2571128IPR001471AP2/ERF domain
PROSITE profilePS5103218.97971127IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1771129IPR016177DNA-binding domain
PRINTSPR003672.7E-57283IPR001471AP2/ERF domain
CDDcd000181.11E-1472129No hitNo description
PRINTSPR003672.7E-5109129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MADPYSNVPK TPVDQPTTTS NPNPFIQIPP TLPNPPTSTL PDDSSSSSSL RLGVPSQSGG  60
STSGSPKGHP VYRGIRCRNG KWVSEIREPR KTTRIWLGTY PKPEMAAAAY DVAAIALKGP  120
DTPLNFPNSI LTYPIPASSA ASDIRSAAAR AAQSRANKLV PRERESGGRS EPGSVDNEGV  180
GGVVGQQEEE FMDEEALLNM PNLLVDMAEG MLVSPPRISS DNSPENSDGE NLWNY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302540.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324780.0GU732478.1 Malus x domestica AP2 domain class transcription factor (AP2D54) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315898.11e-167ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ904e-54ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLD5L1381e-166D5L138_MALDO; AP2 domain class transcription factor
STRINGXP_008377078.11e-169(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-42ERF family protein
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]