PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000262498

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

BES1

Protein Properties

Length: 685aa MW: 76631.2 Da PI: 5.9591

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000262498	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	141.2	9.9e-44	71	205	2	142
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqss 97 +g+++++kE+E++k+RER RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr++ p ++a + ++ s++ s MDP0000262498 71 NKGKREREKEKERTKLRERLRRSITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEPDGTTYRHSPPPS---QMAAAYQNPMGMRSVE-S 162 5799*****************************************************************555554...4444444444444444.5 PP DUF822 98 lkssalaspvesysaspksssfpspssldsislasaasllpvlsv 142 ++ss +++ +s+ + + ++++sp+slds+ + + ++ ++ + MDP0000262498 163 PVSSGVKATNPSS--MARIDESLSPASLDSVVIGERDTTATATAT 205 6678777777665..555677788889999988876333333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.6E-43	72	202	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	2.8E-171	247	679	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	4.21E-158	248	677	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	5.2E-81	271	648	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	284	298	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	305	323	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	327	348	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	420	442	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	493	512	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	527	543	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	544	555	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	562	585	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.2E-54	599	621	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MNDDDSLRHD LDPQSDHSSD YLPHPHHSSH PIQPQQSHPQ PQPQPRRPRG FAATAAGSAG 60 PTSPSSTPTT NKGKREREKE KERTKLRERL RRSITSRMLA GLRQYGNFPL PARADMNDVL 120 AALAREAGWV VEPDGTTYRH SPPPSQMAAA YQNPMGMRSV ESPVSSGVKA TNPSSMARID 180 ESLSPASLDS VVIGERDTTA TATATATVTA ATNNSVECLE MEAGDQLMHH LSNSISSGDH 240 GIPTTALAYV PLYAALATGF INSYCQLVDP EGLRQELAHV QSLNIDGVVV DCWWGIVEGW 300 SPQKYVWSGY RALFNIVREF KLKLQVVMAF HEYGRSESGD ALIXLPQWIL EIGKKNPDIF 360 FTDREGRRNT ECLSLGIDKE RVLQGRTGVE VYFDFMRSFR TEFDDLFTEG LISAVEIGLG 420 ASGELKYPSF SERMGWRYPG IGEFQCYDRY LQQSLQKAAK LRGHSFWARG PENAGEYNSR 480 PHETGFFCER GDYDSYYGRF FLHWYAQSLI DHADSVLSLA SLAFDEXKLI VKVPAVFWWY 540 KTTSHAAELT SGYYNPTNQD GYSPIFEVLK KHLATVKFVC SGPQISSQDN EALADPEGLS 600 WQVLNLAWDR GLTVAGENAL SCYDREGCMR IVEMVKPRND PDRHHFSFFV YQQXSPLVQG 660 TICFPELGFF IKCMHGESAE DLVSC

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MNDDDSLRHD LDPQSDHSSD YLPHPHHSSH PIQPQQSHPQ PQPQPRRPRG FAATAAGSAG  60
PTSPSSTPTT NKGKREREKE KERTKLRERL RRSITSRMLA GLRQYGNFPL PARADMNDVL  120
AALAREAGWV VEPDGTTYRH SPPPSQMAAA YQNPMGMRSV ESPVSSGVKA TNPSSMARID  180
ESLSPASLDS VVIGERDTTA TATATATVTA ATNNSVECLE MEAGDQLMHH LSNSISSGDH  240
GIPTTALAYV PLYAALATGF INSYCQLVDP EGLRQELAHV QSLNIDGVVV DCWWGIVEGW  300
SPQKYVWSGY RALFNIVREF KLKLQVVMAF HEYGRSESGD ALIXLPQWIL EIGKKNPDIF  360
FTDREGRRNT ECLSLGIDKE RVLQGRTGVE VYFDFMRSFR TEFDDLFTEG LISAVEIGLG  420
ASGELKYPSF SERMGWRYPG IGEFQCYDRY LQQSLQKAAK LRGHSFWARG PENAGEYNSR  480
PHETGFFCER GDYDSYYGRF FLHWYAQSLI DHADSVLSLA SLAFDEXKLI VKVPAVFWWY  540
KTTSHAAELT SGYYNPTNQD GYSPIFEVLK KHLATVKFVC SGPQISSQDN EALADPEGLS  600
WQVLNLAWDR GLTVAGENAL SCYDREGCMR IVEMVKPRND PDRHHFSFFV YQQXSPLVQG  660
TICFPELGFF IKCMHGESAE DLVSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-122	247	677	9	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373437.2	0.0	beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A498JSP1	0.0	A0A498JSP1_MALDO; Beta-amylase
STRING	XP_008373437.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11902	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	MDP0000262498

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]