PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000262224
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 321aa    MW: 36680.6 Da    PI: 9.6963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000262224genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-10245269226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    + + C ++++tGtCky ++C F+H+
  MDP0000262224 245 GKADCLHYMQTGTCKYENNCLFNHP 269
                    6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.591243271IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-5243270IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-8245269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6247270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4249268IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
EIIVGDFVLE VPKDKAKPRE GLAEKQDQIK NKKKVTKDKA KQREELAVKQ DQTESKVSKE  60
KAKQREEXAE KQDQTKIKVS KDKAKQTEEL AEKQDQTESK KKLSKDKAKQ KEELAENQDH  120
TESKMKVSKD KAKQREELAE KQDXTESKKK VSKDKAKQRG ELAEKQGQTK NKVSKDKSKQ  180
RGELAEEQGQ TKNKKASKDK AKQRGELAEK QGQTKNKYCP GQCKGEPSVA PALELNFLGL  240
PIRPGKADCL HYMQTGTCKY ENNCLFNHPD PTPLEESRPQ STYESHGIHS ETAEWNDVIT  300
XVLYSXVYLP LMILMYELPF F
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.64670.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959750.11e-179vicilin-like seed storage protein At2g18540 isoform X37
TrEMBLA0A498JJL41e-165A0A498JJL4_MALDO; Uncharacterized protein
STRINGXP_008384274.13e-98(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.19e-15C3H family protein