PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000261432
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family YABBY
Protein Properties Length: 149aa    MW: 16430.2 Da    PI: 7.1725
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000261432genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY75.81.4e-23680479
          YABBY  4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee 79
                   + ++eq+Cy+ CnfC+ +lavsvP +slf +vtvrCG Ct+l svn+a a q l+ ++  + +  +   ++ + ++
  MDP0000261432  6 DVATEQLCYIPCNFCSIVLAVSVPCSSLFDIVTVRCGRCTNLWSVNMAAAFQSLSWQDV-QAQNYNCNSQNYRIDS 80
                   5689***********************************************99999985.5555444445544433 PP

2YABBY44.94.5e-14110134135159
          YABBY 135 eeiqrikasnPdishreafsaaakn 159
                    eeiqrika+nPdishreafs+aakn
  MDP0000261432 110 EEIQRIKANNPDISHREAFSTAAKN 134
                    9***********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.2E-26888IPR006780YABBY protein
PfamPF046903.5E-12110134IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MTSCVDVATE QLCYIPCNFC SIVLAVSVPC SSLFDIVTVR CGRCTNLWSV NMAAAFQSLS  60
WQDVQAQNYN CNSQNYRIDS GSSSKCNKKN ATGDPTLDPC HGRKGCEPTE EIQRIKANNP  120
DISHREAFST AAKNDPEKHL MSRXALLNN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132761e-144bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364015.12e-83PREDICTED: axial regulator YABBY 5-like
SwissprotQ8GW463e-46YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD9ZJG65e-80D9ZJG6_MALDO; YABBY domain class transcription factor
STRINGXP_009364015.17e-83(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-48YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]