PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000261185
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 1483aa    MW: 168191 Da    PI: 7.2635
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000261185genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.41.9e-0778158888
           FAR1   8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                    k+ GF +++ +s   ++++   + t+ C + g+ +e+k+++ k+rr + ++++gC  +lk +k+   + w+++ +   HnH+
  MDP0000261185  78 KRNGFVIVTIRSDMGSKST-KPRVTLGCERGGRFKEKKTRAAKKRRGTGTKKCGCPFTLKGEKSAnGDGWMLKVVCGVHNHA 158
                    6789999888877764444.7899************99999*********************9998899************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-578158IPR004330FAR1 DNA binding domain
PfamPF105512.0E-27275368IPR018289MULE transposase domain
Gene3DG3DSA:2.60.120.2001.7E-810981207IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561123.83E-7311741478IPR011009Protein kinase-like domain
PROSITE profilePS5001137.75711941483IPR000719Protein kinase domain
SMARTSM002201.3E-2811941482IPR000719Protein kinase domain
PfamPF077141.5E-4211991478IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS00107012001223IPR017441Protein kinase, ATP binding site
CDDcd140668.22E-8512001481No hitNo description
Gene3DG3DSA:3.30.200.207.7E-2312081256No hitNo description
Gene3DG3DSA:1.10.510.101.5E-4112571476No hitNo description
PROSITE patternPS00108013261338IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1483 aa     Download sequence    Send to blast
MEHQIIIYDK SVRMERAKLL LEVVGLAQNV QRTTQDDNSA RDSGVSSDCV MDFTSEFTTY  60
VIFKTRESLM QWAREAGKRN GFVIVTIRSD MGSKSTKPRV TLGCERGGRF KEKKTRAAKK  120
RRGTGTKKCG CPFTLKGEKS ANGDGWMLKV VCGVHNHAST EYPDGRSYAG RLSEQEXSLL  180
IDLSKXLVRP KEILSTLKQR DELNATTIRT IYNARQRQRV KEKAGRSQMQ QLLCKLNEHD  240
YVEWHRRCPM SDSVQDLFWA HPVSLELLRA FPTXLMIDCT YKTNRYHYPL LEVVGVTSTD  300
ITFSVAFVFL DSEKEDNYIW ALSKLRGVMV ECPMPNVIVT DMDLXLMRAI EVVFPTAKNL  360
LCKWHINKHV LAKCKNLFES KEMCDRFIMK WNVLVTSPTE NDYMWDLAVL QREFSMYTEV  420
MEYVTNTWLN PFKERFVSAW TDMIMHFGNV TSNRVEGVHT KLKRELGMSQ GNFEGSFERI  480
HXLIELQHND IKISFDKCLX VTQQSFKSSE FKYLRGVVSM FALEKVLSQS KLAISIGAGG  540
LGCGCVIPRT HGLPCAHEIV KYKRECRPIP LESLDPHWTK LDILPPSSAQ ESMDVNEFPE  600
LELLQRYFLE ANAENRLMLR KRVRELVAPY TTSLVEPGLG VKSRLQGQLR EKIDMSTQQD  660
PYAFELKSAF XYSHSPSAMD DQQNFKHKQM ERTKEVYRTL SMKGISYIDA FPIGLRPFIQ  720
QVKDVCHDGH CGFRAVADLV GLGENGYLQV RNDLLTELSS YSAHYGELYX STDRVRELAQ  780
ILSFFDEGRA PFDRWMMMPD MGHLIASCYK VVLFHLSSTQ CLTFLPLRSA PVSLPRRRQI  840
AIGFMNDCHC VEVFLRPGHP VPPIASDWIR YHTPAAQGWD TVYTSCILRF KSLEDTYLWE  900
DDDDRYSVEK IXLYDSAEDE PSSRLFKAVN SSEFDVAGMM VNVNVDSEHQ LMSTALVVQS  960
LDSVPMEGVV VEVKTEVSEG RKLYSENNQL SIXKKNAMIS RIRSNTAGRN YHIGSGSMSN  1020
KRSKQYNGKL KHGAQKQVDA KCVAALLASK EAQEEILSYE RMKNDSATHL ESLYNEIRPA  1080
IEEHERDSQD SVATSVAENY TPHSLSLSRS ISMYMDKPVQ SVLAATGGFF VVTLILAAVY  1140
LVCKDCKSKS TRSRPARPLC NPAALSAIIV DESTSFDPCL KFSMEEVVKA TKNFSAHLVV  1200
GDGGFGLVYK AQLPDGLTVA IKKLDPDAFQ GFREFQAEME TLGKLRHPNI VKILGYCVSG  1260
ADRILIYEFI SKGNLDRWLY DSWSSDGDGY EDGPGLRLPL SWKTRIKIVR GVANGLAYLH  1320
GLEKPIIHRD IKASNVLLDK DFEAHIADFG LARSMDASWS HVSTQFAGTM GYMPPEYKEG  1380
FTGATVRADV FSFGILMLEV ATGRRPNLPT VHDGNQMGLV EWARKMVEQN RQMEMVDSSI  1440
SNEDLDEGEV KEYFSIATTC AREISRDRPA MKEVIEMLDQ IST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh4_A1e-641178148128319Protein BRASSINOSTEROID INSENSITIVE 1
4oh4_B1e-641178148128319Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_A2e-641178148128319Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_B2e-641178148128319Protein BRASSINOSTEROID INSENSITIVE 1
5lpb_A4e-65117814813294Protein BRASSINOSTEROID INSENSITIVE 1
5lpv_A4e-65117814813294Protein BRASSINOSTEROID INSENSITIVE 1
5lpw_A4e-65117814813294Protein BRASSINOSTEROID INSENSITIVE 1
5lpy_A4e-65117814813294Protein BRASSINOSTEROID INSENSITIVE 1
5lpz_A1e-64117814813294Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136780.0cell culture| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965241.10.0uncharacterized protein LOC103411920 isoform X2
TrEMBLM5VX460.0M5VX46_PRUPE; Uncharacterized protein
STRINGXP_008381888.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-15FAR1-related sequence 5