PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000261112
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 359aa    MW: 39609.3 Da    PI: 8.583
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000261112genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.61.1e-2368112145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+ep+rC+RtDGKkWRCsr+v ++ k+CErH h+ r+rsrk++e+
  MDP0000261112  68 DPEPWRCKRTDGKKWRCSRDVAPDLKYCERHAHKTRNRSRKPVES 112
                    79****************************************986 PP
2QLQ45.81.8e-16739234
            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                   +FTaaQ ++L++Q ++yKy++ + PvPp+Ll++
  MDP0000261112  7 PFTAAQREELERQTMIYKYMMDSSPVPPQLLLP 39
                   8******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-7642IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-11739IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.766742IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.17268112IPR014977WRC domain
PfamPF088791.8E-1969111IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVNARLPFTA AQREELERQT MIYKYMMDSS PVPPQLLLPT SKNTSIVPRL FPNLVKGSLE  60
LGISGSSDPE PWRCKRTDGK KWRCSRDVAP DLKYCERHAH KTRNRSRKPV ESQTLNPNFL  120
TNNNNMRSPT SNFFRQSNIT NQQSPYSSNM VPSAAAAAGP HVQPRSLAWF MNGEAPAVGG  180
SNQEWEQMMQ FKLGLKSSSH NYTKPTNTDV DVPKQQTEGS LNLHTDYSGE IQGLQIQQTR  240
HFIDAWSTST SAEREEDRVF VSPNQKLPFS SLTLSMSGGE GSNEERENTQ MGLGVLGEER  300
ESVGGLKSQW MNPMSWMMGS PPGGPLAEAL CLGIAGGSKG CNSGSTSCKS SSGHGRQEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959590.10.0growth-regulating factor 8-like isoform X1
TrEMBLA0A498JQH60.0A0A498JQH6_MALDO; Uncharacterized protein
STRINGXP_008374159.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-44growth-regulating factor 8