PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000260803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 485aa MW: 53331.1 Da PI: 7.1418 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.5 | 5.7e-28 | 112 | 170 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ldDgy+WrKYGqK+vkg+ + rsYYrCt+++C+vk++ver++ +++++++Y geH+h+k MDP0000260803 112 LDDGYHWRKYGQKSVKGNXYVRSYYRCTHPKCEVKRQVERKH-SGQITDTIYFGEHEHSK 170 59***************************************9.***************85 PP | |||||||
2 | WRKY | 103.2 | 1.5e-32 | 288 | 345 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYYrC+ +gCpv+k+ver+++d kvv+ tYeg+H+h+ MDP0000260803 288 SDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVRKHVERASHDSKVVIATYEGQHDHD 345 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-25 | 105 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.954 | 107 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-22 | 110 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-30 | 112 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-22 | 113 | 168 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-34 | 276 | 347 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-29 | 279 | 347 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.921 | 282 | 347 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-37 | 287 | 346 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-26 | 289 | 344 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MISRGEDGTD KVASDVLQKK ESSDSEINVP HQTPNKGIYP LQSDHKGTAQ FLTPEKASQV 60 PDGVVSASQP NQEGSASSLT SEKTPQTPET TALALRSGQE GTTPSTTLER VLDDGYHWRK 120 YGQKSVKGNX YVRSYYRCTH PKCEVKRQVE RKHSGQITDT IYFGEHEHSK VQSVPAAVSF 180 VVSIVDDGRP EVVLETDGED KSSNAHGHAS NQIEPVDPPQ LSSVAVTEAV QGVLAQSNRT 240 RDGDPDPKRQ YVLAIAILNF PVHWKKAKHK GNSLPVVVQT LSEVDIVSDG YRWRKYGQKL 300 VKGNPNPRSY YRCSNPGCPV RKHVERASHD SKVVIATYEG QHDHDMPPTR TVTHNTAASN 360 VFTTARISES GAVPKGNAVC RDTSPEHEVK PSKQRKTKSR DVAGSDVVVD SDLSPERTLH 420 EKLVAKACTT KESEPPYMIV CRADQMKTLE LGIKSEGDDM VVCDNLRPES NPLEQEKPKA 480 EPVDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-35 | 107 | 348 | 3 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.27096 | 0.0 | fruit| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229756 | 3e-47 | KP229756.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY27) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028953492.1 | 0.0 | WRKY transcription factor 1-like | ||||
TrEMBL | A0A498HC98 | 0.0 | A0A498HC98_MALDO; Uncharacterized protein | ||||
STRING | XP_008342183.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9358 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 4e-81 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000260803 |