PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000260056

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 362aa MW: 37483.9 Da PI: 6.4026

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000260056	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.7	2e-34	75	144	3	72
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 +++++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tg+++ +a + MDP0000260056 75 PARRSSKDRHTKVEGRGRRIRMPAVCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIQATGSGTVPAIA 144 57899**********************************************************6666632 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-28	79	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.606	80	134	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MKSNQRQSLE ESNELEHGGD SNNTTTSASG PLVADPPATA LTMKEELTDP VQHLDPQGSL 60 SMGIVPVPVS TALKPARRSS KDRHTKVEGR GRRIRMPAVC AARIFQLTRE LGHKSDGETI 120 RWLLEHAEPA IIQATGSGTV PAIAISVGGT LKIPTTSPAR PNGEITEIPN KRKKMRGSTG 180 EFIDAHDQNS LPSGLAPIAP MTYGGGGGGL VPMWQVGATG AAGPFFMFPN SGAIQNQPQL 240 WAIPTADSTA PIFNFQPRPM SDFVSAFQPG VQVGGVSGGD GQLQASSGSM SSGTAAGGGG 300 TCSSSLGHSL DSASGTSAAA AADAPPSSAT QMLRDFSLEI YDKKELQFMG QAANAQTTYS 360 ES

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MKSNQRQSLE ESNELEHGGD SNNTTTSASG PLVADPPATA LTMKEELTDP VQHLDPQGSL  60
SMGIVPVPVS TALKPARRSS KDRHTKVEGR GRRIRMPAVC AARIFQLTRE LGHKSDGETI  120
RWLLEHAEPA IIQATGSGTV PAIAISVGGT LKIPTTSPAR PNGEITEIPN KRKKMRGSTG  180
EFIDAHDQNS LPSGLAPIAP MTYGGGGGGL VPMWQVGATG AAGPFFMFPN SGAIQNQPQL  240
WAIPTADSTA PIFNFQPRPM SDFVSAFQPG VQVGGVSGGD GQLQASSGSM SSGTAAGGGG  300
TCSSSLGHSL DSASGTSAAA AADAPPSSAT QMLRDFSLEI YDKKELQFMG QAANAQTTYS  360
ES

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.24592	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008376508.1	0.0	transcription factor TCP19-like
TrEMBL	A0A498JN13	0.0	A0A498JN13_MALDO; Uncharacterized protein
STRING	XP_008376508.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-64	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000260056