PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259723
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 240aa    MW: 27586.5 Da    PI: 6.7969
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259723genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.19.5e-36571673110
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssgkaaksaa. 95 
                    ++kdrhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d+++k+i+WL++++k+ai +l +++++ +  ++c++ +   ++ ++++g+++  +  
  MDP0000259723  57 ARKDRHSKVYTSKGPRDRRFRLSAHTAIQFYDVQDRLGYDRPGKAIDWLIKKSKAAIEALSKSEQPCQeyNDCTNTNVFGQQTEQEIGEQSMHQFw 152
                    79*************************************************************888777778855555555555555533333333 PP

            TCP  96 kskksqksaasalnl 110
                    ++ +s+ + ++++n+
  MDP0000259723 153 NHPESNGELETMSNV 167
                    333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3258158IPR005333Transcription factor, TCP
PROSITE profilePS5136931.60858116IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLRQRESKNK EEQNEDYQHV HYLLPTSKSA FKQPPVDNAR YEHIVKVHGG HIVRSLARKD  60
RHSKVYTSKG PRDRRFRLSA HTAIQFYDVQ DRLGYDRPGK AIDWLIKKSK AAIEALSKSE  120
QPCQEYNDCT NTNVFGQQTE QEIGEQSMHQ FWNHPESNGE LETMSNVSPM NNVNNLKEPV  180
FDPHQLSSLN YAEEALDSAS SLSDSKFKEM GWFQSLVAWN YNASDGGEIC PYNSSHVSLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2063116154Putative transcription factor PCF6
5zkt_B6e-2063116154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371709.10.0transcription factor TCP5-like
TrEMBLA0A498ISM71e-148A0A498ISM7_MALDO; Uncharacterized protein
STRINGXP_008345973.10.0(Malus domestica)
STRINGXP_008371709.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.17e-39TCP domain protein 10