PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000259614 | ||||||||
Common Name | MYB1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 222aa MW: 26321.1 Da PI: 8.7916 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.9e-15 | 44 | 87 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg + ++E +l+++++++lG++ W++Iar+++ gRt++ +k++w++ MDP0000259614 44 RGDFKEDEVDLIIRLHRLLGNR-WSLIARRLP-GRTANAVKNYWNT 87 78999*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.099 | 1 | 38 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 26 | 50 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-18 | 27 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.825 | 39 | 93 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-14 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 44 | 87 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.62E-9 | 47 | 89 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 51 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEGYNENLSV RKGAWTREED NLLRQCRKSC RQRWLNYLKP NIKRGDFKED EVDLIIRLHR 60 LLGNRWSLIA RRLPGRTANA VKNYWNTRLR IDSRMKTVKN KSQEMRKTNV IRPQPQKFNR 120 SSYYLSSKEP ILDHIQSAED LSTPPQTSSS TKNGNDWWET LLEGEDTFEX AAYPSIELEE 180 ELFTSFWFDD RLSPRSCANF PEGQSRSEFS FSTDLWNHSK EE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-18 | 12 | 90 | 7 | 105 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.7513 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB279598 | 0.0 | AB279598.1 Malus x domestica MdMYBA mRNA for myb transcription factor, complete cds. | |||
GenBank | AB744000 | 0.0 | AB744000.1 Malus domestica MYB1 mRNA for MYB transcription factor, complete cds, cultivar: Fuji. | |||
GenBank | AB744001 | 0.0 | AB744001.1 Malus domestica MYB1 mRNA for MYB transcription factor, complete cds, cultivar: JPP35. | |||
GenBank | GU270471 | 0.0 | GU270471.1 Malus x domestica cultivar Ralls MYB1 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963316.1 | 1e-158 | transcription factor MYB113-like isoform X1 | ||||
Refseq | XP_028963317.1 | 1e-158 | transcription factor MYB113-like isoform X1 | ||||
Swissprot | Q9FNV9 | 9e-38 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0SQ37 | 1e-157 | A0SQ37_MALDO; MYB transcription factor | ||||
STRING | XP_008381347.1 | 1e-157 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 4e-40 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000259614 |
Publications ? help Back to Top | |||
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