PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000259403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 258aa MW: 29081.1 Da PI: 9.0576 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 128.2 | 9.5e-40 | 7 | 117 | 233 | 345 |
GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E++++ +ei+n+++ceg +r+erhe++ +Wr+r+++aGF+++p MDP0000259403 7 ELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFXEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQAAP 102 69********************************************************************************************** PP GRAS 329 lsekaakqaklllrkvk 345 ++ +qak l k+k MDP0000259403 103 IKM--LAQAKQWLGKIK 117 975..557777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 23.56 | 1 | 128 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-37 | 7 | 117 | IPR005202 | Transcription factor GRAS |
Gene3D | G3DSA:3.30.70.141 | 1.4E-55 | 120 | 247 | No hit | No description |
Hamap | MF_00451 | 30.53 | 120 | 255 | IPR001564 | Nucleoside diphosphate kinase |
SMART | SM00562 | 6.1E-74 | 120 | 253 | IPR001564 | Nucleoside diphosphate kinase |
SuperFamily | SSF54919 | 3.4E-51 | 121 | 248 | No hit | No description |
Pfam | PF00334 | 2.0E-49 | 122 | 247 | IPR001564 | Nucleoside diphosphate kinase |
PRINTS | PR01243 | 1.6E-46 | 123 | 145 | IPR001564 | Nucleoside diphosphate kinase |
CDD | cd04413 | 8.44E-80 | 123 | 247 | No hit | No description |
PRINTS | PR01243 | 1.6E-46 | 167 | 186 | IPR001564 | Nucleoside diphosphate kinase |
PRINTS | PR01243 | 1.6E-46 | 187 | 204 | IPR001564 | Nucleoside diphosphate kinase |
PRINTS | PR01243 | 1.6E-46 | 208 | 224 | IPR001564 | Nucleoside diphosphate kinase |
PRINTS | PR01243 | 1.6E-46 | 231 | 250 | IPR001564 | Nucleoside diphosphate kinase |
PROSITE pattern | PS00469 | 0 | 231 | 239 | IPR023005 | Nucleoside diphosphate kinase, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006165 | Biological Process | nucleoside diphosphate phosphorylation | ||||
GO:0006183 | Biological Process | GTP biosynthetic process | ||||
GO:0006228 | Biological Process | UTP biosynthetic process | ||||
GO:0006241 | Biological Process | CTP biosynthetic process | ||||
GO:0004550 | Molecular Function | nucleoside diphosphate kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSADGHELSP KILVLVEQDS SHNGPFFLGR FMEALHYYSA IFDSLDAMLP KYDTRRAKME 60 QFYFXEEIKN IISCEGPARV ERHERVDQWR RRMSRAGFQA APIKMLAQAK QWLGKIKEQV 120 DETYIMVKPD GVQRGLVGEI ISRFEKKGFK LTGLKLFQCP QDLAEEHYKD LKGKSFFPKL 180 IEYIVSGPVV CMAWEGVGVV AAXRKLIGAT NPLQAEPGTI RGDLAVQTGR NVVHGSDSPE 240 NGKREIGRLA LLASFTLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1s57_A | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s57_B | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s57_C | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s57_D | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s57_E | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s57_F | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s59_A | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s59_B | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s59_C | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s59_D | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s59_E | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
1s59_F | 1e-81 | 118 | 247 | 3 | 132 | Nucleoside diphosphate kinase II |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.6731 | 0.0 | bud| cell culture| fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008392850.2 | 9e-89 | nucleoside diphosphate kinase 2, chloroplastic | ||||
Swissprot | Q852S5 | 1e-80 | NDK2_TOBAC; Nucleoside diphosphate kinase 2, chloroplastic | ||||
TrEMBL | A0A498I2J7 | 7e-95 | A0A498I2J7_MALDO; Nucleoside diphosphate kinase | ||||
STRING | XP_009359482.1 | 3e-88 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-28 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000259403 |