PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000259294
Common NameDAM2
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29388.5 Da    PI: 7.0509
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000259294genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.69.3e-251962851
                   HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rqvtfskRr gi+KKAeELS+LC+ evaviifs+tgkl+++ss
  MDP0000259294 19 ARQVTFSKRRRGIFKKAEELSILCESEVAVIIFSQTGKLFDFSS 62
                   79****************************************96 PP
2K-box27.81.1e-101242001288
          K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                     + +  +++  +L ke+e   r++Rhl+Ge+L++L+l eLq+Le+ +e s  ++ ++K + l+e  ++l++++ +l+
  MDP0000259294 124 DQLQLEKENTIRLSKELEDKTRKLRHLKGEELQDLDLDELQKLEKLVEASHGRVMETKGDELVEANNQLKQRMVMLS 200
                    345666777789999999999**************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-30463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.198464IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-22626IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-23670IPR002100Transcription factor, MADS-box
PfamPF003196.9E-221960IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-222641IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-224162IPR002100Transcription factor, MADS-box
PfamPF014861.1E-7125200IPR002487Transcription factor, K-box
PROSITE profilePS512979.294126230IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVKIRKEKIK IRRIDYLPAR QVTFSKRRRG IFKKAEELSI LCESEVAVII FSQTGKLFDF  60
SSSSWKRDII HVNLIKLWSS PPDNQGELTS FPMFGIGQGH RNTKDVIARY KSHTGEKSNQ  120
SMLDQLQLEK ENTIRLSKEL EDKTRKLRHL KGEELQDLDL DELQKLEKLV EASHGRVMET  180
KGDELVEANN QLKQRMVMLS ARGDIGPAAI MELENLNNGG EEGVTSESAT NVTTSSNSPL  240
SLEDDCSDIL SLKLGCAALT S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.146159e-74fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1649970.0KP164997.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315905.10.0MADS-box protein JOINTLESS-like
TrEMBLA0A0D5CUL70.0A0A0D5CUL7_MALDO; Dormancy-associated MADS-box transcription factor
STRINGXP_008378580.11e-146(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-27AGAMOUS-like 24
Publications ? help Back to Top
  1. Wisniewski M,Norelli J,Artlip T
    Overexpression of a peach CBF gene in apple: a model for understanding the integration of growth, dormancy, and cold hardiness in woody plants.
    Front Plant Sci, 2015. 6: p. 85
    [PMID:25774159]