PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000257606
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 1062aa    MW: 120418 Da    PI: 6.4092
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000257606genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.59.8e-136046881699
                    EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    ++lp k + ++     k+ s  ++l+ ++gr+W+v+++    ++ +  l+ GW eFv+ n+L++gD+ v+ l+++++  + v +fr+
  MDP0000257606 604 VWLPSKLCIHMrrL-GKH-SGAVILRVLDGRTWSVEMKCeIATRPKLRLQYGWTEFVRGNNLEVGDVYVLVLIDDTKLVFEVVIFRA 688
                    78999999888852.333.448***************87555555699*************************99999899999886 PP
2B3512.6e-167738551397
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                    + + +l  kf++eh +k +   +++l+ ++gr+W vkl  +++++++ l++GW  Fv++ +L+ gD++vF l+++ ++  + v +f
  MDP0000257606 773 RTLQYLGAKFTKEHFLKRN-YHQVILRVSDGRTWPVKL-SKRQKNMVRLQNGWITFVQDSHLEIGDVCVFALINNiKGL-MDVVIF 855
                    455588899*****77754.458***************.5888889**************************9985544.666555 PP
3B337.44.4e-129349941880
                    --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EE CS
             B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfv 80 
                    l  kfa eh ++ +    ++l+ + gr+W vkl   ++s++   +++GW  Fv++ngL+ gD++
  MDP0000257606 934 LEAKFAXEHLLNRTH-DNVILRVSGGRTWPVKL--HQYSKTvLKFQSGWMTFVQDNGLEIGDSF 994
                    6679*****777544.59***************..6666665899*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF015821.4E-7272IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525402.52E-3893283IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.7E-20122291IPR002182NB-ARC
PRINTSPR003642.8E-13133147No hitNo description
PRINTSPR003642.8E-13224238No hitNo description
SuperFamilySSF520584.76E-31313537IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.8E-20321523IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077256.3E-6374393IPR011713Leucine-rich repeat 3
PRINTSPR003642.8E-13463479No hitNo description
Gene3DG3DSA:2.40.330.102.3E-16583689IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-15584689IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-15589687No hitNo description
SMARTSM010195.3E-5591689IPR003340B3 DNA binding domain
PfamPF023626.5E-11603688IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787624689IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111761858IPR003340B3 DNA binding domain
SMARTSM010194.3E-7766858IPR003340B3 DNA binding domain
PfamPF023623.2E-14771853IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-17772856IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-16775856IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-15777855No hitNo description
SMARTSM010190.00729211012IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-11931994IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-10936994IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-9936994IPR003340B3 DNA binding domain
CDDcd100176.44E-10937994No hitNo description
PROSITE profilePS508639.7849511021IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1062 aa     Download sequence    Send to blast
MVVPVFYQVD PSDVRKAKRS FEEAFAEHEG HSNTDMEEVR RWRDDVKLIE EIVKDIFQKL  60
IRTSSSKDDD LVEMDSHMHE MDLLLHPAPQ MDDEEFSXCG AVHMQEKFLS RIXNEKVQSL  120
GTLDRGYRMI LKRXQXKKVL IVLDDVDDXF QIETLLGKQH SFGGGSRIII TTRDKLVLSX  180
ADAIYSPKVL SGXGALELFS QYAFXTKQPK RDYDHLSSRA VRYAQGLPLA LKVLGAFLYN  240
KSXQEWEEVL EKLKKIPQRG IHDVLRTSFD GLDDSEKDIF LDIACFFKGA EKDNATKATE  300
AVESIILDPS FSKPEVVYLS SEAFVKMTKL RLLKIHCDSG YSCENLKFLP HELRSLIWKH  360
FPLKSLPSNF IAKNLVELDM QNSLIEHLWE GAKPLENLKI INLTSSPHLK KTPDFTEAKN  420
LEKVVFRSCT SLLEVHPSIS SLENLVLLDF ENCGNLKIFP SRIGMKSLRT LTLSGCENLE  480
KFPEVSDVMQ DLSVLYLNSA GIKELPSSIS NLTGLLVLNI NGCRNLEGFC RDHYPLTMPE  540
MEETDEDDDS GNSSWDDDED SDCVEVLDNI IGKAAVAIRR ATAFKSDNPS FIVPMKRNIN  600
GYSVWLPSKL CIHMRRLGKH SGAVILRVLD GRTWSVEMKC EIATRPKLRL QYGWTEFVRG  660
NNLEVGDVYV LVLIDDTKLV FEVVIFRATG TAHTFSPPDV DGEQTMSQTE ETDEDDDSIE  720
ILDNFPRCSK TKKKSPTAPQ PHKKNRTCSV STAENRIKKF GGSSLTXKIM NRRTLQYLGA  780
KFTKEHFLKR NYHQVILRVS DGRTWPVKLS KRQKNMVRLQ NGWITFVQDS HLEIGDVCVF  840
ALINNIKGLM DVVIFHTTEA ARCNVSQDGE KPMSQTEETD EDDDCVEILD DSPPCLKTKK  900
NRVGSISTSE THMKKFGGSS WTKELVKRRP DQNLEAKFAX EHLLNRTHDN VILRVSGGRT  960
WPVKLHQYSK TVLKFQSGWM TFVQDNGLEI GDSFSAVEKX LIAPFHXVSK FSVGCEFLSA  1020
PSVMRYVVFV LNLNLGGTGS XSPWTXEPLI QGNVTSLAHD LE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5166280.0AF516628.1 Malus x domestica putative disease resistance gene analog NBS-LRR (HRGA-H62) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.17e-34WRKY family protein