PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000257577

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 275aa MW: 30126.3 Da PI: 5.9548

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000257577	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.5e-11	63	86	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++++tG CkyG++C+++H++ MDP0000257577 63 LECEYYLKTGDCKYGPSCRYHHPR 86 58********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.1E-5	59	86	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.314	59	87	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	63	88	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.6E-9	63	86	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.2E-5	65	86	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
AXLSPVPSPG AQPTVGATSL YGVTQLSSPT HGLASPYTSI PSSVGPSSSN RSEQVFPERP 60 GELECEYYLK TGDCKYGPSC RYHHPRDRTV LRITCLLSPM GLPLRPGCTV GPSLEDVSMS 120 ISCWILTRMP RGLGELTGLS TLDKFVLSEN NSLLRDSAGL GELGKLRELR GQLEIIHLRQ 180 EKDVIRSNVS DTECCMEACE DILKSAADQM YSCSEHTGTI MSLAALTQRD IAELVETAAL 240 FRPISYLEHI TSKFALRMVN IYVDQVFLIF FKVTA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12211	1e-164	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	1e-34	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000257577