PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000257227

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 314aa MW: 35261.1 Da PI: 6.5637

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000257227	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.1	1.4e-38	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i+++q+ +e kael+ MDP0000257227 31 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKHLDQPDKDEAMRTIIFQSDVRANDPVGGCYRIIREMQHLIEYNKAELDI 126 7********************************************************************************************998 PP DUF260 97 lkee 100 + ++ MDP0000257227 127 ILHQ 130 7665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.33	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-36	31	126	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MSSSSHSHNH THHISTTTTT PSTKGNGNTQ ACAACKYQRR KCAPDCILAP YFPHDRQRQF 60 LNAHKLFGVS NITKIIKHLD QPDKDEAMRT IIFQSDVRAN DPVGGCYRII REMQHLIEYN 120 KAELDIILHQ LAICRAQAQQ VHQQQHQNPI QMPEIGDQNT CDLLINGDPL SLCGNPMGHF 180 HYIQQPQPPH HAVALQQEQP QEQQQQLPYV FVQNNANSNN NSDNNNGGPH AHPHHQHLHE 240 DVSIWAMQDS MSSLDIKQCG GGMNGIANGC EDLKPFLDQM GCGDDHDRNN GEVVDINGDH 300 QHSEEALLRV HRAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-24	19	125	1	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-24	19	125	1	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008338722.1	0.0	LOB domain-containing protein 22
Swissprot	Q9LRW1	3e-58	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A498HDK9	0.0	A0A498HDK9_MALDO; Uncharacterized protein
STRING	XP_008338722.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	7e-55	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	MDP0000257227

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]