PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000256160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 194aa MW: 22025.1 Da PI: 9.6156 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.3e-10 | 139 | 163 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C +++rtGtCky ++C F+H+ MDP0000256160 139 GKKDCLHYMRTGTCKYENNCLFNHP 163 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-4 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.929 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.2E-6 | 139 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 143 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
IETIRVYPAS ALIGSAKKCM YACVNXFVYY AXMMIFPAEL TQKEVSKDKA KQREELAVKQ 60 DQTESKKVFK DNAKQRGELA EKQGQTKNKV FKDKAKQRGE LAEKQGQTRN KYCPGXXKXE 120 PSVAPALKLN FLGLPIRPGK KDCLHYMRTG TCKYENNCLF NHPDPTPAEE SHPQFAYESH 180 GIHSKTTEFI TPVL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.6467 | 1e-173 | bud| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959722.1 | 4e-99 | trichohyalin-like isoform X10 | ||||
Refseq | XP_028959741.1 | 1e-99 | trichohyalin-like isoform X29 | ||||
TrEMBL | A0A498JK69 | 5e-91 | A0A498JK69_MALDO; Uncharacterized protein | ||||
STRING | XP_008352151.1 | 5e-95 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 2e-15 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000256160 |