PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000255768

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WRKY

Protein Properties

Length: 951aa MW: 105300 Da PI: 8.5941

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000255768	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.7	1.8e-31	114	170	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+e+p++++itYeg H h MDP0000255768 114 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSSEEPDTLIITYEGLHLH 170 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	26.9	108	173	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	8.9E-29	111	170	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-26	111	170	IPR003657	WRKY domain
SMART	SM00774	1.6E-35	113	172	IPR003657	WRKY domain
Pfam	PF03106	6.5E-25	114	170	IPR003657	WRKY domain
Pfam	PF06480	6.6E-7	440	567	IPR011546	Peptidase M41, FtsH extracellular
TIGRFAMs	TIGR01241	3.8E-143	582	948	IPR005936	Peptidase, FtsH
Gene3D	G3DSA:3.40.50.300	5.6E-46	637	811	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	2.27E-55	638	876	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00382	5.2E-9	674	805	IPR003593	AAA+ ATPase domain
CDD	cd00009	1.30E-17	675	747	No hit	No description
Pfam	PF00004	2.4E-27	679	785	IPR003959	ATPase, AAA-type, core
Gene3D	G3DSA:1.10.8.60	6.0E-24	812	879	No hit	No description
Pfam	PF01434	3.1E-27	865	949	IPR000642	Peptidase M41
SuperFamily	SSF140990	7.85E-17	886	949	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006508	Biological Process	proteolysis
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004222	Molecular Function	metalloendopeptidase activity
GO:0005524	Molecular Function	ATP binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 951 aa Download sequence Send to blast
MEEAMXATWS DGSEEELVRE LLDNESPFFV LPEESVQSRT TSAFGKEAIN GFIPNVYSGP 60 TIQDIETALS VTTGTVQPQE LSNARLSLLE RGLSKVEHKY ILKIKSCGNG IMADDGYKWR 120 KYGQKSIKNS PNPRSYYRCT NPRCSAKKQV ERSSEEPDTL IITYEGLHLH FAYPFFDFNN 180 QAQXSSPSMK KPKKKTSVPQ AEDHDREAQE SLRSVTPDPV RDLPPGPFPG RHQGXVEEER 240 SSQGLLQDMV PFMIRNPKPS SWYNLSGSRS RMLFSPTLST PAQRELHQGI AALSLPPSQL 300 PAEAPATGEP KKEEKNVISG SYNWRNTLRH DSFPPSSTPL GNACVDGCVG ILRGYIAYNG 360 AGKQFLSKAY MSNLKSVLGI PRIRRLFSSQ GPGKKTLRKL LSEKQEGNSE RGXTEIXVQR 420 WSGEYSGTVF EAXSRFIAPL MFIGFIVTSL FLNPHQTKEV ITXLRETSLF GSLSRRIKIT 480 FIFQEFKNKL LEPGLVNHVE VANKSVAKVY MRSSACEKVH SDDSVRDTVN GSPSEGNVTQ 540 FKYYFNIGSV QSFEEKLEEA QEALGIDRHD FVPVIYVSQV MWSKELLRYG PTMLLLGALW 600 FMSRKMPSVG GPGGKSGRGI FNIGKAQVTK LDKNAKNKVL FKDVAGCDEA KQEIMEFVHF 660 LKHPKKYEEL GAKIPKGALL VGHPGTGKTL LAKATADESG VPFLSISGSD FMEMFVGVGT 720 SRVQSLFQEA RQCAPSIIFI DEIDAIGWAR GHGGFSGGHG ERESTLNQLL VELDGFGTTA 780 GVVGLAGTLL RPGQFDCQIT IDKPDIKGRN QIFQIYLSKL KLDLEPSFYS ERLAALTPGF 840 AGTDIANICN EAALIAARNE SPKITMKHFE AAIDRVIGGL EKKNKVISKL ERWTVAYHES 900 GHAVAGWFLE HAEPLLKVTI VRHGAAALGF AQYVPNENLL MTKEQLFDMN A

Sequence ? help Back to Top

Protein Sequence Length: 951 aa Download sequence Send to blast

MEEAMXATWS DGSEEELVRE LLDNESPFFV LPEESVQSRT TSAFGKEAIN GFIPNVYSGP  60
TIQDIETALS VTTGTVQPQE LSNARLSLLE RGLSKVEHKY ILKIKSCGNG IMADDGYKWR  120
KYGQKSIKNS PNPRSYYRCT NPRCSAKKQV ERSSEEPDTL IITYEGLHLH FAYPFFDFNN  180
QAQXSSPSMK KPKKKTSVPQ AEDHDREAQE SLRSVTPDPV RDLPPGPFPG RHQGXVEEER  240
SSQGLLQDMV PFMIRNPKPS SWYNLSGSRS RMLFSPTLST PAQRELHQGI AALSLPPSQL  300
PAEAPATGEP KKEEKNVISG SYNWRNTLRH DSFPPSSTPL GNACVDGCVG ILRGYIAYNG  360
AGKQFLSKAY MSNLKSVLGI PRIRRLFSSQ GPGKKTLRKL LSEKQEGNSE RGXTEIXVQR  420
WSGEYSGTVF EAXSRFIAPL MFIGFIVTSL FLNPHQTKEV ITXLRETSLF GSLSRRIKIT  480
FIFQEFKNKL LEPGLVNHVE VANKSVAKVY MRSSACEKVH SDDSVRDTVN GSPSEGNVTQ  540
FKYYFNIGSV QSFEEKLEEA QEALGIDRHD FVPVIYVSQV MWSKELLRYG PTMLLLGALW  600
FMSRKMPSVG GPGGKSGRGI FNIGKAQVTK LDKNAKNKVL FKDVAGCDEA KQEIMEFVHF  660
LKHPKKYEEL GAKIPKGALL VGHPGTGKTL LAKATADESG VPFLSISGSD FMEMFVGVGT  720
SRVQSLFQEA RQCAPSIIFI DEIDAIGWAR GHGGFSGGHG ERESTLNQLL VELDGFGTTA  780
GVVGLAGTLL RPGQFDCQIT IDKPDIKGRN QIFQIYLSKL KLDLEPSFYS ERLAALTPGF  840
AGTDIANICN EAALIAARNE SPKITMKHFE AAIDRVIGGL EKKNKVISKL ERWTVAYHES  900
GHAVAGWFLE HAEPLLKVTI VRHGAAALGF AQYVPNENLL MTKEQLFDMN A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6nyy_A	1e-135	603	948	3	355	AFG3-like protein 2
6nyy_B	1e-135	603	948	3	355	AFG3-like protein 2
6nyy_C	1e-135	603	948	3	355	AFG3-like protein 2
6nyy_D	1e-135	603	948	3	355	AFG3-like protein 2
6nyy_E	1e-135	603	948	3	355	AFG3-like protein 2
6nyy_F	1e-135	603	948	3	355	AFG3-like protein 2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.10311	0.0	bud\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable ATP-dependent zinc metallopeptidase. Involved in the assembly and/or stability of the complexes I and V of the mitochondrial oxidative phosphorylation system. {ECO:0000269\|Ref.9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high light. {ECO:0000269\|PubMed:15266057}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008369915.2	0.0	ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like
Swissprot	Q8VZI8	0.0	FTSHA_ARATH; ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
TrEMBL	A0A498K480	0.0	A0A498K480_MALDO; Uncharacterized protein
STRING	XP_008369915.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7118	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	3e-47	WRKY DNA-binding protein 49

Link Out ? help Back to Top
Phytozome	MDP0000255768

Publications ? help Back to Top
Sokolenko A, et al. The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts. Curr. Genet., 2002. 41(5): p. 291-310 [PMID:12185496] Sakamoto W,Zaltsman A,Adam Z,Takahashi Y Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes. Plant Cell, 2003. 15(12): p. 2843-55 [PMID:14630971] Lister R, et al. A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. Plant Physiol., 2004. 134(2): p. 777-89 [PMID:14730085] Yu F,Park S,Rodermel SR The Arabidopsis FtsH metalloprotease gene family: interchangeability of subunits in chloroplast oligomeric complexes. Plant J., 2004. 37(6): p. 864-76 [PMID:14996218] Sinvany-Villalobo G, et al. Expression in multigene families. Analysis of chloroplast and mitochondrial proteases. Plant Physiol., 2004. 135(3): p. 1336-45 [PMID:15266057] Peltier JB,Ytterberg AJ,Sun Q,van Wijk KJ New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. J. Biol. Chem., 2004. 279(47): p. 49367-83 [PMID:15322131] García-Lorenzo M,Sjödin A,Jansson S,Funk C Protease gene families in Populus and Arabidopsis. BMC Plant Biol., 2006. 6: p. 30 [PMID:17181860] Piechota J,Kolodziejczak M,Juszczak I,Sakamoto W,Janska H Identification and characterization of high molecular weight complexes formed by matrix AAA proteases and prohibitins in mitochondria of Arabidopsis thaliana. J. Biol. Chem., 2010. 285(17): p. 12512-21 [PMID:20172857] Janska H,Piechota J,Kwasniak M ATP-dependent proteases in biogenesis and maintenance of plant mitochondria. Biochim. Biophys. Acta, 2010 Jun-Jul. 1797(6-7): p. 1071-5 [PMID:20193658] Wagner R, et al. Fitness analyses of Arabidopsis thaliana mutants depleted of FtsH metalloproteases and characterization of three FtsH6 deletion mutants exposed to high light stress, senescence and chilling. New Phytol., 2011. 191(2): p. 449-58 [PMID:21438879] Wagner R,Aigner H,Funk C FtsH proteases located in the plant chloroplast. Physiol Plant, 2012. 145(1): p. 203-14 [PMID:22121866] Kolodziejczak M,Skibior-Blaszczyk R,Janska H m-AAA Complexes Are Not Crucial for the Survival of Arabidopsis Under Optimal Growth Conditions Despite Their Importance for Mitochondrial Translation. Plant Cell Physiol., 2018. 59(5): p. 1006-1016 [PMID:29462458]