PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000255392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TALE | ||||||||
Protein Properties | Length: 309aa MW: 34396.3 Da PI: 8.2396 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.3 | 7.3e-10 | 126 | 163 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + MDP0000255392 126 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 163 664459******************************87 PP | |||||||
2 | BELL | 53.9 | 4.4e-18 | 1 | 43 | 30 | 72 |
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +q+v++sFe v gl sa+pY+ +Al+a+SrhFrcL + i++q+ MDP0000255392 1 MQMVVASFESVXGLSSATPYICMALNAVSRHFRCLTNSIKDQL 43 9***************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 2.4E-12 | 1 | 39 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.888 | 104 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.08E-11 | 107 | 168 | No hit | No description |
SMART | SM00389 | 1.2E-7 | 107 | 171 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.46E-17 | 109 | 174 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 110 | 171 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-18 | 124 | 163 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MQMVVASFES VXGLSSATPY ICMALNAVSR HFRCLTNSIK DQLKHTRKAL GEEYMSSSVT 60 AAGTAECSSK GEKNFAKLKY MGLGFQKHNK SGGGSLVGFS EPQQHVWRPQ RGLPERSVAI 120 LRTWLFEHFL HPYPTDTDKH MLATQTGLSR NQVSNWFINA RVRVWKPMVE EIHMLETRGG 180 SFEAGQDPII KDGNSANEGT SSRPNNDHQL SMNVMPNRQL ECSVDAEQRN QEMKRSRLEC 240 QVPSNMDGGL MGFVQDQRGG FEAGGLGAVS LTLGLRHGVE SAQQQQQLQQ QEDQLRXQLG 300 GQMIRDYAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-15 | 113 | 170 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-15 | 113 | 170 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009367039.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A498KB13 | 0.0 | A0A498KB13_MALDO; Uncharacterized protein | ||||
STRING | XP_008355186.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3481 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 7e-62 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000255392 |