PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000255023
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 429aa    MW: 48091.9 Da    PI: 7.6772
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000255023genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.34.5e-40154214262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    +e+alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  MDP0000255023 154 HEQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 214
                    7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-28152212IPR003851Zinc finger, Dof-type
PfamPF027012.1E-33156212IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.189158212IPR003851Zinc finger, Dof-type
PROSITE patternPS013610160196IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MTDELLGPID FECLPHAIKX SRLIRASSIR MSLVXIHNQR TKRYLIWVIT ILVNSLCLNP  60
RIPRRGSGED PNPGEYILCL YKEGEWDLHV WARKWSALSF CLMGHNSLQV CMDSSDWLQG  120
TIREDSPMDS SSPLSGDMLT CSRPLVERRL RPQHEQALKC PRCDSTHTKF CYYNNYSLSQ  180
PRYFCKTCRR YWTKGGTLRN IPVGGGCRKN KKVSSKKPND QSPSSLMNQH HHPGSSSSSI  240
SHIPTDLHLS FPDQMQFSHL NNLMLGSNMN PSSFMDNSNP RPIDFMESKL EAIVGNARNY  300
DFMGGGADLG MMGGYGNNMG GVSHGLEHQS SFHGICSSPF GMSSIDGQNG NFMDSCQRLM  360
LPYDQANHED HHQINAMDVK PNTKLLSLEW QDQAGCSDLG KDSFGYLNGL GSWSNVMNSY  420
APSTTNPLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302480.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315963.10.0dof zinc finger protein DOF5.6
TrEMBLD9ZIX80.0D9ZIX8_MALDO; DOF domain class transcription factor
STRINGXP_008367523.10.0(Malus domestica)
STRINGXP_008393027.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.16e-48Dof family protein