PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254936
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 1199aa    MW: 133825 Da    PI: 7.0697
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254936genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.52.8e-1281675362374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +++L++cA+a+s+++l +a  l++ l +++s +g+pmqRl ay++e+L+arl rs+s++yk+l+++  +   ss+ +++++++++++P+ +f+++ 
  MDP0000254936 167 KDVLIDCARAISENELDNAICLMEVLGQMVSVSGEPMQRLGAYMLEGLRARLERSGSSIYKTLKCEVPT---SSQLMSYMSVLYKICPYWRFAYMS 259
                    789*****************************************************************9...999999****************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN  I ea+e+e r+HiiDf+i qG QW++L+q La +p+gpp++RiTgv++ +s+  +   l+ +g+rL+++A++++vpfefn+ +a   +++el
  MDP0000254936 260 ANVVIREALENEPRIHIIDFQIAQGSQWIPLIQDLARQPGGPPRIRITGVDDTQSEhaRGGGLHIVGNRLSELAASCNVPFEFNA-AAMCGSEVEL 354
                    ****************************************************9988889999***********************.899******* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++Lr+ pgEa+aVn+ + lh+++desvs+e++rd++L+lvkslsPkv+++veqe+++n+++F+ rf+e ++yy+a+f+s+++  pr++++ri+ E 
  MDP0000254936 355 HNLRILPGEAIAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVMTLVEQESNTNTSPFFSRFVEMVDYYTAMFESIDVACPRDDKQRISAEM 450
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++++r+ivn+vacegaer+erhe ++kWr+rl++ GF+p+pls k+++ ++ ll++++++ +rv+e +g+l+l W++r++ + SaWr
  MDP0000254936 451 HCVARDIVNMVACEGAERVERHEPFGKWRSRLTMDGFTPYPLSPKVTEAIRVLLKEYHGN-FRVQEANGALYLSWMQRAMATSSAWR 536
                    **********************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.589140517IPR005202Transcription factor GRAS
PfamPF035149.7E-126167536IPR005202Transcription factor GRAS
PROSITE profilePS5030322.6628771196IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.106.3E-8902976IPR011989Armadillo-like helical
SuperFamilySSF483712.3E-379041180IPR016024Armadillo-type fold
SMARTSM000251.7937972IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503027.474937972IPR001313Pumilio RNA-binding repeat
Gene3DG3DSA:1.25.10.106.9E-3010221194IPR011989Armadillo-like helical
PROSITE profilePS503025.53810261061IPR001313Pumilio RNA-binding repeat
SMARTSM000254010621098IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503025.60710621098IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.66711301171IPR001313Pumilio RNA-binding repeat
SMARTSM000255.411331172IPR001313Pumilio RNA-binding repeat
PfamPF008062.7E-411361161IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1199 aa     Download sequence    Send to blast
MKTSQQHRGI ALYHQPVQQI DRCGFQILEN SMYPDTGSQG NNLSFQTDKD DKEQFFTLES  60
SPSTDFLPCD SPSAISGLSN RSPFSPQGSH SCFSDQHHSS GNNYGSPISG CSIIVDDDFK  120
YKLREMEVSL LGPDSDIVDS HFCSHRSGMA RWSQSQIAET IPKLNLKDVL IDCARAISEN  180
ELDNAICLME VLGQMVSVSG EPMQRLGAYM LEGLRARLER SGSSIYKTLK CEVPTSSQLM  240
SYMSVLYKIC PYWRFAYMSA NVVIREALEN EPRIHIIDFQ IAQGSQWIPL IQDLARQPGG  300
PPRIRITGVD DTQSEHARGG GLHIVGNRLS ELAASCNVPF EFNAAAMCGS EVELHNLRIL  360
PGEAIAVNFP YVLHHMPDES VSTENHRDRL LRLVKSLSPK VMTLVEQESN TNTSPFFSRF  420
VEMVDYYTAM FESIDVACPR DDKQRISAEM HCVARDIVNM VACEGAERVE RHEPFGKWRS  480
RLTMDGFTPY PLSPKVTEAI RVLLKEYHGN FRVQEANGAL YLSWMQRAMA TSSAWRTRAA  540
TTSRKGRLRV ENAKAGDFXS QQISNEHEAG ASGGNSDVWE VTQLEKTTAE RLEAVASKSA  600
NFPKWLRLSH IRRLARSLNN LGGEVIGNHQ IVAQVAPKGG ASNASFEQNL SVEEIRVISD  660
DKPKFGQTID VRGEVEGADV DGYTPQFVFS ASCILPTCHI FSLGQVLEVL ALSVTMATSC  720
YSASDPPNPE TPCVPPSYSL RRQQEADLCH YFGNVRVTVD KSSTSSPGSS SYATPTKIEQ  780
AQYDFYPRYE SGLRNCPRAP MALYSESIWG GNSVNARGNF MGSNNLNVHQ LIGNPATEER  840
TRANWSVGAT STSLGNWAHQ LSPFGNSDWN QNYGGQNYRG NVESTGLYYF KGNNWAQSSG  900
IPSEIARLAM TQLGSQALVQ RMITPSDPLA KSMVLEGVFG SLFEVMCDFH GHYVFRKLVE  960
SCNHSQLRLI VAKITLNSKP LINISVCNYG YPSNPYSLTL KKTVCFGEIY LRFMLHSCDG  1020
LKIYEAVVRL CVRLAQHERG CIHLNEFITN SKTPYREKLM DKVSSNSKFL SQDPSGNFVV  1080
QHIFTLYNPV FSAKICFELR NLYIQLSLQK GGSHVVEMCL NSLGMEVVVN VFLKYDKLWQ  1140
VARDQYGNYV IQTALKATKR ENSPLHQMLL EKLNKDRSEL MVGFGRKVLS VIDKGIPLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5017353926382Protein SCARECROW
5b3h_A1e-5017353925381Protein SCARECROW
5b3h_D1e-5017353925381Protein SCARECROW
5hyz_A9e-511705368375GRAS family transcription factor containing protein, expressed
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.109770.0bud| cell culture| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3976380.0JQ397638.1 Malus zumi SCL mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498JX080.0A0A498JX08_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13