PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254208
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 463aa    MW: 51578.1 Da    PI: 4.5179
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254208genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.8e-36101012102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++ +++isw+e+g++fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+kell++i
  MDP0000254208  10 FLMKTYQLVDDPSSDDVISWNESGTTFVVWKTVDFARDMLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANDNFQRGQKELLSEI 96 
                    9***************************************************************9999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+ks
  MDP0000254208  97 RRRKS 101
                    ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-58699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-37799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.8E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.8E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF064059.8E-97258459IPR009439Red chlorophyll catabolite reductase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAQRSVPAPF LMKTYQLVDD PSSDDVISWN ESGTTFVVWK TVDFARDMLP KYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANDNFQRGQK ELLSEIRRRK SVTSTAAHXP PGEKSGVPST  120
PSNSGEEMAS TSTSSPDSKN PGSVETAAPS QVADLSDENQ KLKRENENLN SELAQTKKQC  180
DELVGFLVEH MKMKPDQINR IIGQGICGPX GDDFEADDHG LDLDMEGGDD EEEEEGLKLV  240
ILGPSADKYY RENLSGAHEV DLILGSWLHC ELPTGGALNI TSLSSYLNPT TDAPNFLLEL  300
IQSSPTSLVL ILDLPPRKDL VLHPDYLQTF YQXTQLDTPR QKLEKLAEVK PYFSSSLYIR  360
SVVSPTAILV RIEAGSGGEG KGLEDIIEND LSPIAKEVLG IWLDQCACGE REVGEDEREY  420
LKRRDDLIKR KTIEIDLGSN FPRLFGADAA DRVLGAIREV YKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3agb_A5e-6626046372275Red chlorophyll catabolite reductase, chloroplastic
3agb_B5e-6626046372275Red chlorophyll catabolite reductase, chloroplastic
3agc_A5e-6626046372275Red chlorophyll catabolite reductase, chloroplastic
3agc_B5e-6626046372275Red chlorophyll catabolite reductase, chloroplastic
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.142300.0cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1321940.0KR132194.1 Eriobotrya japonica heat shock factor 3 (HSF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028949872.11e-163heat stress transcription factor B-1
TrEMBLA0A498HX021e-161A0A498HX02_MALDO; Uncharacterized protein
STRINGXP_008338368.11e-162(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.18e-85heat shock factor 4