PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000254187
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 444aa    MW: 50566.7 Da    PI: 9.7109
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000254187genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.2e-091101442155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yp+++++  LA+ +gL+++q+ +WF N+R ++
  MDP0000254187 110 KWPYPTEADKISLAQVTGLDQKQINNWFINQRKRH 144
                    569*****************************885 PP
2ELK36.88.5e-136485122
            ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                   ELK+ LlrKYsgy+++Lk+EFs
  MDP0000254187 64 ELKDKLLRKYSGYISTLKHEFS 85
                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011888.9E-86485IPR005539ELK domain
PfamPF037891.2E-106485IPR005539ELK domain
PROSITE profilePS5121310.7726484IPR005539ELK domain
PROSITE profilePS5007111.96984147IPR001356Homeobox domain
SMARTSM003891.6E-1286151IPR001356Homeobox domain
SuperFamilySSF466892.99E-1986158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-2889148IPR009057Homeodomain-like
CDDcd000861.52E-1196148No hitNo description
PfamPF059205.6E-17104143IPR008422Homeobox KN domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PfamPF047831.8E-20263319IPR006868Domain of unknown function DUF630
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAFLDYGVPS LCSHGRDSVS TLKSKPNKLR GNCKDDAAGS SDEEDWSGGE IEAQDSPRTK  60
EDHELKDKLL RKYSGYISTL KHEFSKTKKK GKLPKEARQI LFDWWNLHYK WPYPTEADKI  120
SLAQVTGLDQ KQINNWFINQ RKRHWKPSEN MQFAVMDRLY GPCLSTFQVG QELLLGDYWK  180
RDLVSPTSLG LRGMMGFRQR RSFRLDRGLL AAQSALLAQM LWDMHMDSSP VAIYKIHEHL  240
RPKVEVKKEL QQKLAKVPAG PKMGCCYSRV EREEMVSICK SRKRYMKQLV KTRQAWSAAH  300
TMYLCSLRST GSALLQFLNA QQLQPPPQLQ SSPPQQLPVI AVTTTNPANP TTASATTSTQ  360
LKLRFVDDFH DTLNNSRTSA ATATFVHVGF LGPICGFLFK ASDKRRVGSY DYRFGGDDHR  420
HCGEHGETAV GGEWIFEKER DDDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.14e-51KNOTTED1-like homeobox gene 6